Gene detail information of Glyur000130s00006934.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27640.1 | 5.00E-133 | Transducin/WD40 repeat-like superfamily protein |
| NR | KHN27454.1 | 0 | Denticleless protein like [Glycine soja] |
| COG | YP_007126274.1 | 9.00E-19 | (Myosin heavy-chain) kinase [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q39190|PRL2_ARATH | 8.00E-13 | Protein pleiotropic regulator PRL2 |
| trEMBL | tr|I1K1K0|I1K1K0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 323856 | 327533 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000130s00006934.1 | PF00400.27 | WD40 | 106 | 136 | 7.30E-05 |
| Glyur000130s00006934.1 | PF00400.27 | WD40 | 141 | 179 | 5.50E-10 |
| Glyur000130s00006934.1 | PF00400.27 | WD40 | 326 | 347 | 0.086 |
| Glyur000130s00006934.1 | PF00400.27 | WD40 | 356 | 391 | 9.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.104 |
| SRR1783600 | control | 1.024 |
| SRR1783602 | moderate drought stress | 0.396 |
| SRR1811619 | moderate drought stress | 0.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.736 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.624 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.100 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.108 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.010 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.497 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.108 |
| SRR2967015 | Control (Tissue:root) | 1.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.298 |
| SRR9715740 | Leave | 0.083 |
| SRR9715741 | Leave | 0.337 |
| SRR9715739 | Root | 0.205 |
| SRR9715742 | Root | 0.481 |
| SRR9715743 | Root | 0.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.791 |
| SRR8749028 | MeJA induced 9h | 2.602 |
| SRR8749029 | MeJA induced 9h | 1.375 |
| SRR8749030 | Uninduced | 0.184 |
| SRR8749031 | Uninduced | 0.431 |
| SRR8749032 | Uninduced | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.923 |
| SRR8400027 | Control-Root | 1.740 |