Gene detail information of Glyur000132s00015942.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10910.1 | 5.00E-36 | RING/U-box superfamily protein |
| NR | XP_003623617.1 | 2.53E-91 | RING-H2 finger protein ATL5H [Medicago truncatula] |
| Swissprot | tr|Q9SG96|ATL72_ARATH | 7.00E-57 | RING-H2 finger protein ATL72 |
| trEMBL | tr|G7KY47|G7KY47_MEDTR | 9.00E-92 | RING-H2 finger protein ATL1L {ECO:0000313|EMBL:AES79835.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00132 | 117687 | 118286 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000132s00015942.1 | PF13639.1 | zf-RING_2 | 109 | 152 | 5.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.810 |
| SRR1783600 | control | 11.930 |
| SRR1783602 | moderate drought stress | 20.997 |
| SRR1811619 | moderate drought stress | 21.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.237 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.507 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.418 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.162 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.100 |
| SRR2967015 | Control (Tissue:root) | 15.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.847 |
| SRR9715740 | Leave | 9.366 |
| SRR9715741 | Leave | 6.677 |
| SRR9715739 | Root | 12.481 |
| SRR9715742 | Root | 17.066 |
| SRR9715743 | Root | 14.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.059 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.543 |
| SRR8400027 | Control-Root | 24.851 |