Gene detail information of Glyur000134s00009741.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G18280.22.00E-124tubby like protein 2
NRXP_003517227.10PREDICTED: tubby-like F-box protein 5-like isoform X1 [Glycine max]
Swissprottr|Q6Z2G9|TLP5_ORYSJ4.00E-169Tubby-like F-box protein 5
trEMBLtr|I1J8U3|I1J8U3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37940.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001343333160-


Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000134s00009741.1PF00646.28F-box551076.20E-10
Glyur000134s00009741.1PF01167.13Tub1191738.50E-08
Glyur000134s00009741.1PF01167.13Tub2174341.20E-69


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.361
SRR1783600control17.832
SRR1783602moderate drought stress26.212
SRR1811619moderate drought stress25.759

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.160
DRR006520Root Summer glycyrrhizin high producing strain22.205
DRR006521Root Winter glycyrrhizin high producing strain13.190
DRR006522Root Winter glycyrrhizin high producing strain13.007
DRR006523Root Summer glycyrrhizin low producing strain22.706
DRR006524Root Summer glycyrrhizin low producing strain23.267
DRR006525Leaf Summer glycyrrhizin high producing strain10.072
DRR006526Leaf Summer glycyrrhizin high producing strain9.720

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.173
SRR2868004Drought Stress(Tissue:root)33.280
SRR2967015Control (Tissue:root)36.843

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.025
SRR9715740Leave8.294
SRR9715741Leave7.825
SRR9715739Root18.595
SRR9715742Root23.495
SRR9715743Root20.520

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.088
SRR8749028MeJA induced 9h22.819
SRR8749029MeJA induced 9h15.628
SRR8749030Uninduced13.606
SRR8749031Uninduced8.569
SRR8749032Uninduced12.954

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.944
SRR8400027Control-Root24.866

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved