Gene detail information of Glyur000134s00009743.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21710.1 | 4.00E-16 | DNA-directed RNA polymerase family protein |
| NR | ADV71906.1 | 7.43E-18 | RNA polymerase II second largest subunit [Rhododendron rarum] |
| Swissprot | tr|Q42877|RPB2_SOLLC | 1.00E-18 | DNA-directed RNA polymerase II subunit RPB2 |
| trEMBL | tr|G0TBR3|G0TBR3_9ERIC | 3.00E-18 | RNA polymerase II second largest subunit {ECO:0000313|EMBL:ADV71906.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 5608 | 6175 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03010 | RPB2, POLR2B | EC:2.7.7.6 | Purine metabolism | map00230 |
| Pyrimidine metabolism | map00240 | |||
| RNA polymerase | map03020 | |||
| Huntington's disease | map05016 | |||
| Epstein-Barr virus infection | map05169 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.296 |
| SRR1783600 | control | 0.025 |
| SRR1783602 | moderate drought stress | 0.377 |
| SRR1811619 | moderate drought stress | 0.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.826 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.573 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.983 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.172 |
| SRR2967015 | Control (Tissue:root) | 1.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.110 |
| SRR9715740 | Leave | 0.058 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.273 |
| SRR9715742 | Root | 0.055 |
| SRR9715743 | Root | 0.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.222 |
| SRR8749028 | MeJA induced 9h | 1.294 |
| SRR8749029 | MeJA induced 9h | 0.856 |
| SRR8749030 | Uninduced | 1.618 |
| SRR8749031 | Uninduced | 1.912 |
| SRR8749032 | Uninduced | 2.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.501 |
| SRR8400027 | Control-Root | 0.648 |