Gene detail information of Glyur000134s00009765.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66460.13.00E-88Glycosyl hydrolase superfamily protein
NRXP_003612065.11.68E-142Mannan endo-1,4-beta-mannosidase [Medicago truncatula]
COGYP_003324408.12.00E-41glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|Q9FJZ3|MAN7_ARATH4.00E-106Mannan endo-1,4-beta-mannosidase 7 (Precursor)
trEMBLtr|G7KF03|G7KF03_MEDTR6.00E-143Mannan endo-1,4-beta-mannosidase-like protein {ECO:0000313|EMBL:AES95023.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00134111185113874+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19355MAN EC:3.2.1.78 Fructose and mannose metabolism map00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000134s00009765.2PF00150.13Cellulase472144.70E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.791
SRR1783600control23.332
SRR1783602moderate drought stress18.720
SRR1811619moderate drought stress18.320

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.491
DRR006520Root Summer glycyrrhizin high producing strain24.056
DRR006521Root Winter glycyrrhizin high producing strain0.832
DRR006522Root Winter glycyrrhizin high producing strain0.775
DRR006523Root Summer glycyrrhizin low producing strain12.658
DRR006524Root Summer glycyrrhizin low producing strain12.398
DRR006525Leaf Summer glycyrrhizin high producing strain23.414
DRR006526Leaf Summer glycyrrhizin high producing strain23.700

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.581
SRR2868004Drought Stress(Tissue:root)37.485
SRR2967015Control (Tissue:root)30.165

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.109
SRR9715740Leave17.661
SRR9715741Leave15.481
SRR9715739Root11.209
SRR9715742Root11.334
SRR9715743Root10.287

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.131
SRR8749028MeJA induced 9h1.959
SRR8749029MeJA induced 9h1.227
SRR8749030Uninduced0.054
SRR8749031Uninduced0.102
SRR8749032Uninduced0.267

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root98.929
SRR8400027Control-Root83.426

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved