Gene detail information of Glyur000134s00009780.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51060.1 | 3.00E-42 | Lateral root primordium (LRP) protein-related |
| NR | XP_007158606.1 | 3.10E-129 | hypothetical protein PHAVU_002G166700g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SD40|SRS1_ARATH | 1.00E-81 | Protein SHI RELATED SEQUENCE 1 |
| trEMBL | tr|V7CMW6|V7CMW6_PHAVU | 1.00E-129 | Uncharacterized protein {ECO:0000313|EMBL:ESW30600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 218943 | 221760 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000134s00009780.1 | PF05142.7 | DUF702 | 121 | 276 | 7.50E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.177 |
| SRR1783600 | control | 24.073 |
| SRR1783602 | moderate drought stress | 33.370 |
| SRR1811619 | moderate drought stress | 33.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.230 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.881 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.036 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.533 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.800 |
| SRR2967015 | Control (Tissue:root) | 2.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.413 |
| SRR9715740 | Leave | 1.250 |
| SRR9715741 | Leave | 1.727 |
| SRR9715739 | Root | 8.432 |
| SRR9715742 | Root | 6.795 |
| SRR9715743 | Root | 7.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.814 |
| SRR8749028 | MeJA induced 9h | 39.226 |
| SRR8749029 | MeJA induced 9h | 30.650 |
| SRR8749030 | Uninduced | 7.939 |
| SRR8749031 | Uninduced | 4.331 |
| SRR8749032 | Uninduced | 7.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.885 |
| SRR8400027 | Control-Root | 11.571 |