Gene detail information of Glyur000134s00009786.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G36360.1 | 0 | beta-galactosidase 3 |
NR | XP_004512085.1 | 0 | PREDICTED: beta-galactosidase 3-like [Cicer arietinum] |
COG | YP_003380010.1 | 3.00E-56 | beta-galactosidase [Kribbella flavida DSM 17836] |
Swissprot | tr|Q9SCV9|BGAL3_ARATH | 0 | Beta-galactosidase 3 (Precursor) |
trEMBL | tr|K7K4B2|K7K4B2_SOYBN | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00134 | 252583 | 258189 | - |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000134s00009786.1 | PF01301.14 | Glyco_hydro_35 | 36 | 340 | 3.20E-121 |
Glyur000134s00009786.1 | PF02140.13 | Gal_Lectin | 766 | 843 | 8.20E-20 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 24.325 |
SRR1783600 | control | 24.428 |
SRR1783602 | moderate drought stress | 14.297 |
SRR1811619 | moderate drought stress | 14.218 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 19.905 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 19.749 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.332 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.365 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 9.039 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 9.089 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.476 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.410 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 69.943 |
SRR2868004 | Drought Stress(Tissue:root) | 32.469 |
SRR2967015 | Control (Tissue:root) | 32.989 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 5.267 |
SRR9715740 | Leave | 1.363 |
SRR9715741 | Leave | 2.331 |
SRR9715739 | Root | 15.104 |
SRR9715742 | Root | 18.890 |
SRR9715743 | Root | 18.781 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 31.522 |
SRR8749028 | MeJA induced 9h | 36.483 |
SRR8749029 | MeJA induced 9h | 16.159 |
SRR8749030 | Uninduced | 10.635 |
SRR8749031 | Uninduced | 2.347 |
SRR8749032 | Uninduced | 1.476 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 63.201 |
SRR8400027 | Control-Root | 78.042 |