Gene detail information of Glyur000134s00009791.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75440.15.00E-76ubiquitin-conjugating enzyme 16
NRNP_001237276.13.16E-116uncharacterized protein LOC100305572 [Glycine max]
Swissprottr|Q9FWT2|UBC16_ARATH2.00E-101Probable ubiquitin-conjugating enzyme E2 16
trEMBLtr|C6SVP6|C6SVP6_SOYBN1.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00134298770302504+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10688UBE2W, UBC16 EC:2.3.2.25 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000134s00009791.1PF00179.21UQ_con191541.50E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.905
SRR1783600control39.121
SRR1783602moderate drought stress29.908
SRR1811619moderate drought stress29.963

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.993
DRR006520Root Summer glycyrrhizin high producing strain39.490
DRR006521Root Winter glycyrrhizin high producing strain36.101
DRR006522Root Winter glycyrrhizin high producing strain35.121
DRR006523Root Summer glycyrrhizin low producing strain41.035
DRR006524Root Summer glycyrrhizin low producing strain40.549
DRR006525Leaf Summer glycyrrhizin high producing strain24.397
DRR006526Leaf Summer glycyrrhizin high producing strain24.268

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)92.175
SRR2868004Drought Stress(Tissue:root)108.708
SRR2967015Control (Tissue:root)95.556

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave48.162
SRR9715740Leave44.862
SRR9715741Leave51.301
SRR9715739Root12.011
SRR9715742Root25.423
SRR9715743Root22.983

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h79.820
SRR8749028MeJA induced 9h75.088
SRR8749029MeJA induced 9h95.456
SRR8749030Uninduced75.844
SRR8749031Uninduced89.257
SRR8749032Uninduced80.425

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root78.085
SRR8400027Control-Root73.785

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved