Gene detail

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Gene detail information of Glyur000135s00007281.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27060.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006595805.1	0	PREDICTED: probable inactive receptor kinase At5g10020-like isoform X1 [Glycine max]
COG	YP_004775215.1	1.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q0WR59\|Y5020_ARATH	0	Probable inactive receptor kinase At5g10020 (Precursor)
trEMBL	tr\|G7K2X9\|G7K2X9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AET00044.2}

Sequence

Transcript Sequence

>Glyur000135s00007281.1
ATGCTTGGATTAGGAGCTACTAGGAAAGGCATGCAGGCTATCTGGTTGATGTTGTTGTTGTTGGTGGATATTGCATTGGGGAATTCAGATATTGATGCACTCCTTGAACTCAAGAAGAGTATTCAGAGTGACCCTTCTAGATTAGTTGTTGATTCTTGGGATTTCAAGTCTTTAGATTCTGATGGGTGTCCTCAGAACTGGTATGGGATAGTGTGCAGTGAAGGCAATGTTATATCAATCACTTTGGATAATGCTGGTTTGGTTGGAGACTTTGATTTCCTTGCTATTAGTGGCCTTCCAATGCTTCGCAACTTGTCGGTCGCGAACAACCAGTTCACAGGAAGTACCTTACATAATATTGGTCCAATGAAATCACTTGTATATCTTGATTTGTCACTCAACAAGTTCAATGGGGTGTTGCTCTCCAGCTTTGTTGCATTGCATAGTTTAGTACATCTGAATCTTTCTTCAAATGAATTTAGTGGCACTCTTCCTATTGGGTTTCACAAGCTTCAGAAGTTGAAGTACTTAGATTTGCACAGTAATAACTTTTCTGGGGATATTATGCACATCTTTTCTCAGATGGGAAGTGTACTACATGTTGACTTAAGCAGCAATAGGTTTTCCGGTACACTGGATTTGGGACTTGGAGATGATTCTTTTCTCTCTTCAATTCAGTATTTGAATGTTAGTCACAATTCCTTGATTGGTGAGCTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTCCTTGATGCTAGTAATAATCAGCTAGTGGGTAATATACCTTCCTTCACGTTTGTGGTATCTCTAAGGATTCTTCGACTTGCGTGCAACCAGTTGACAGGTTCACTGCCAGAAGCTTTATTGAAAGAAAGTTCAATGATGTTGTCTGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCAATTGGAAGTATTACCTCAATAACTCTCAGGAAGCTTAATGTATCTTCAAACAAATTGTCAGGCCCAATACCTCTCAGGGTAGGCCACTGTGCCATCATAGATTTGAGTAATAACATGCTGTCAGGTAATTTTTCAAGGATCCAGTATTGGGGTAACTATGTGGAAATNATTCAGCTAAGTACAAACTCATTGACAGGAATGCTTCCAAACAAAACAACTCAATTTTTAAGGTTAACTGCACTTAAGGTATCCAATAACTCGTTGGAGGGCTTTCTCCCACTAGTCTTGGGAACATATCCAGAANTGAAAGAGATTGATCTTAGCCTCAACCAGCTTTCTGGTTCCCTCCTACCAAGCTTTTTCACCTCAACCAAATTGACTAACCTTAACCTCTCAAACAACAAGTTTTCTGGACCAATTCCTATTCAACTTGAACCTCCAAACAATCCCTTGGTTTCTGCTGAAAATTTTAGTNTGGTGTTTCTTGATCTTTCACACAACAACTTGAGTGGGAAACTTCCTTCAAAAATGAACAAGCTTCACAATTTGGCATATCTAAATCTGTGTAACAACAAATTGGAAGGTACTATTCCTAATGATCTCCCAGATGAATTNAGAGGGTTCAATGTGTCCTTTAATAATCTTTCTGGTGTCGTACCGGACAACTTATCGCAGTTTCCTGAATCAGCATTTCATCCNGGAAATACTATGCTGATACTTCCACAATCGCGATTATCACCAAAAGATGCTTCCAACCTAGGTTTGGGNGAACACAGGTCACATAGAAAATCTCTAACTAGGAGTGTCNTGGTTGCATGTTTGGTTACTGGTGCTTTTGTGATTGCTATTGTGGGTATGATGGTTTATTATNGGGTTCATCAGAAAAAAGAAAGGACTTCTAAACAAAATGCAGAAAGTTGCATCATCCAAGAGAGTACTTCCACATCAAACAAAGAGGNACCTAACAGAAATTTGGAATCATTACCACCTTCTCAAAGGGTGTCTGCTGACGATACCACAAACATTCACCCAATCGTAAAGAAGCCGAAAGATCCTGAACTAGTTAAGAATGAGGAAGGAACATCTTCTCGAACGTCTATTTTGTCANCTTCGAATCCTTCATCTTCTACAAGCCATCAGTTTGAGAATCCTGCTTCCCTCAAAGTATCCTCTCCGGATAAACTGGTTGGGGACTTGCATCTATTCGATGGATCCTTGGCGCTAACCGCGGAAGAACTTTCGTGTGCTCCGGCGGAAGTTATTGGCAGGAGTTGTCATGGAACACTCTACAAAGCTACACTTGACTCAGGTCATGCATTGGCAGTCAAATGGTTGAGAGAAGGAATAACTAAAGGTAAAAAGGAGTTGGCAAGGGANATAAAGAAACTTGGGACTATCAAGCATCCAAGCCTGGTTTCTATTCAGGGTTACTACCTGGGGCCAAAGGAGCATGAGAGATTGATTATATCAAATTACATGGACGCACATTCTTTGGACATTTATCTCCAAGAGGCAGATANGAGAAATCTCCATCCTTTGTCTCTTGATGAAAGGCTGAGGGTGGCTGTAGAGGTGGCGCAGTGTCTGCTTTACCTACACACTGAGAAATCCATACCTCATGGNAATCTCAAATCCACAAACATTCTACTAGAAANTACTCCCAACAGGAATGTCCTGATNACTGACTACAGCCTGCACNGNATACTCACNGCCGCNGGCACCGCNGANCAAGTCCTGAANGCCGGTGCACTNGGTTACCGGCCTCCTGAGTTCGCTAGGTCAAGCAAACCATGCCCTTCCTTGAAGAGTGATGTNTATGCATTTGGGGTTGTCNTNTTAGAGCTCCTAACAGGAAGANGTTCTGGNGAAATAGTTTCTGGGATTCCTGGGGTTGTTGACATTACTGACTGGGTGAGATTCTTAGCTGAACAAGGTTGCTCTAGCCAGTGCTTTGACAAGTCCCTTGTGGACAAGAACAATGGAGAAAGAACAGAATCTAAGATTCTTGATGACATGCTAAAGGTGGCTCTTAGATGCATCCTTCCAGCATCTGAGAGACCTGACATGAAAACTGTCTTTGATGATCTTACAACAATAAGGGAGAGTTGCTCATCATCATAG

Protein Sequence

>Glyur000135s00007281.1
MLGLGATRKGMQAIWLMLLLLVDIALGNSDIDALLELKKSIQSDPSRLVVDSWDFKSLDSDGCPQNWYGIVCSEGNVISITLDNAGLVGDFDFLAISGLPMLRNLSVANNQFTGSTLHNIGPMKSLVYLDLSLNKFNGVLLSSFVALHSLVHLNLSSNEFSGTLPIGFHKLQKLKYLDLHSNNFSGDIMHIFSQMGSVLHVDLSSNRFSGTLDLGLGDDSFLSSIQYLNVSHNSLIGELFAHDGMPYLDNLEVLDASNNQLVGNIPSFTFVVSLRILRLACNQLTGSLPEALLKESSMMLSELDLSQNKLEGPIGSITSITLRKLNVSSNKLSGPIPLRVGHCAIIDLSNNMLSGNFSRIQYWGNYVEXIQLSTNSLTGMLPNKTTQFLRLTALKVSNNSLEGFLPLVLGTYPEXKEIDLSLNQLSGSLLPSFFTSTKLTNLNLSNNKFSGPIPIQLEPPNNPLVSAENFSXVFLDLSHNNLSGKLPSKMNKLHNLAYLNLCNNKLEGTIPNDLPDEXRGFNVSFNNLSGVVPDNLSQFPESAFHPGNTMLILPQSRLSPKDASNLGLGEHRSHRKSLTRSVXVACLVTGAFVIAIVGMMVYYXVHQKKERTSKQNAESCIIQESTSTSNKEXPNRNLESLPPSQRVSADDTTNIHPIVKKPKDPELVKNEEGTSSRTSILSXSNPSSSTSHQFENPASLKVSSPDKLVGDLHLFDGSLALTAEELSCAPAEVIGRSCHGTLYKATLDSGHALAVKWLREGITKGKKELARXIKKLGTIKHPSLVSIQGYYLGPKEHERLIISNYMDAHSLDIYLQEADXRNLHPLSLDERLRVAVEVAQCLLYLHTEKSIPHGNLKSTNILLEXTPNRNVLXTDYSLHXILTAAGTAXQVLXAGALGYRPPEFARSSKPCPSLKSDVYAFGVVXLELLTGRXSGEIVSGIPGVVDITDWVRFLAEQGCSSQCFDKSLVDKNNGERTESKILDDMLKVALRCILPASERPDMKTVFDDLTTIRESCSSS

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	26902	30577	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007281.1	PF08263.7	LRRNT_2	28	73	7.50E-08
Glyur000135s00007281.1	PF00560.28	LRR_1	149	171	0.79
Glyur000135s00007281.1	PF00560.28	LRR_1	250	268	0.19
Glyur000135s00007281.1	PF13516.1	LRR_6	437	451	0.68
Glyur000135s00007281.1	PF00560.28	LRR_1	495	514	1.1
Glyur000135s00007281.1	PF07714.12	Pkinase_Tyr	732	1004	9.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.760
SRR1783600	control	0.761
SRR1783602	moderate drought stress	0.233
SRR1811619	moderate drought stress	0.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.743
DRR006520	Root Summer glycyrrhizin high producing strain	0.737
DRR006521	Root Winter glycyrrhizin high producing strain	0.036
DRR006522	Root Winter glycyrrhizin high producing strain	0.035
DRR006523	Root Summer glycyrrhizin low producing strain	0.519
DRR006524	Root Summer glycyrrhizin low producing strain	0.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.675
SRR2868004	Drought Stress(Tissue:root)	2.665
SRR2967015	Control (Tissue:root)	2.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.561
SRR9715740	Leave	0.442
SRR9715741	Leave	0.759
SRR9715739	Root	0.245
SRR9715742	Root	1.155
SRR9715743	Root	0.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.822
SRR8749028	MeJA induced 9h	3.347
SRR8749029	MeJA induced 9h	3.555
SRR8749030	Uninduced	1.920
SRR8749031	Uninduced	1.139
SRR8749032	Uninduced	0.976

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.315
SRR8400027	Control-Root	2.613