Gene detail information of Glyur000135s00007294.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G74470.14.00E-153Pyridine nucleotide-disulphide oxidoreductase family protein
NRXP_003617078.10Geranylgeranyl reductase [Medicago truncatula]
COGYP_007161931.16.00E-175geranylgeranyl reductase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q9ZS34|CHLP_TOBAC0Geranylgeranyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|G7K2X2|G7K2X2_MEDTR0Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AET00037.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001359028791663-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10960chlP, bchP EC:1.3.1.83 1.3.1.111 Porphyrin and chlorophyll metabolism map00860
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0015979  photosynthesis

GO:0015995  chlorophyll biosynthetic process

GO:0051188  cofactor biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016628  oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

GO:0045550  geranylgeranyl reductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000135s00007294.1PF01494.14FAD_binding_3492282.40E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.718
SRR1783600control28.886
SRR1783602moderate drought stress23.264
SRR1811619moderate drought stress23.316

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.979
DRR006520Root Summer glycyrrhizin high producing strain27.419
DRR006521Root Winter glycyrrhizin high producing strain9.299
DRR006522Root Winter glycyrrhizin high producing strain9.240
DRR006523Root Summer glycyrrhizin low producing strain21.862
DRR006524Root Summer glycyrrhizin low producing strain21.641
DRR006525Leaf Summer glycyrrhizin high producing strain17.400
DRR006526Leaf Summer glycyrrhizin high producing strain17.287

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.338
SRR2868004Drought Stress(Tissue:root)20.740
SRR2967015Control (Tissue:root)18.519

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.082
SRR9715740Leave7.243
SRR9715741Leave8.079
SRR9715739Root25.681
SRR9715742Root17.500
SRR9715743Root20.905

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.236
SRR8749028MeJA induced 9h12.826
SRR8749029MeJA induced 9h12.441
SRR8749030Uninduced6.264
SRR8749031Uninduced5.157
SRR8749032Uninduced13.817

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.888
SRR8400027Control-Root20.016

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved