Gene detail information of Glyur000135s00007303.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76490.10hydroxy methylglutaryl CoA reductase 1
NRXP_004491163.10PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cicer arietinum]
COGNP_126055.13.00E-1143-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
Swissprottr|P29057|HMDH1_HEVBR03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|I1JIP4|I1JIP4_SOYBN03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00135139893143829-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00021HMGCR EC:1.1.1.34 Terpenoid backbone biosynthesis map00900
AMPK signaling pathwaymap04152
Bile secretionmap04976


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0015936  coenzyme A metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004420  hydroxymethylglutaryl-CoA reductase (NADPH) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0050661  NADP binding

GO:0050662  coenzyme binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000135s00007303.1PF00368.13HMG-CoA_red1745521.20E-159


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.246
SRR1783600control37.319
SRR1783602moderate drought stress31.594
SRR1811619moderate drought stress31.178

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.617
DRR006520Root Summer glycyrrhizin high producing strain36.325
DRR006521Root Winter glycyrrhizin high producing strain16.114
DRR006522Root Winter glycyrrhizin high producing strain15.713
DRR006523Root Summer glycyrrhizin low producing strain32.163
DRR006524Root Summer glycyrrhizin low producing strain31.889
DRR006525Leaf Summer glycyrrhizin high producing strain10.170
DRR006526Leaf Summer glycyrrhizin high producing strain9.968

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)84.956
SRR2868004Drought Stress(Tissue:root)71.791
SRR2967015Control (Tissue:root)52.922

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.010
SRR9715740Leave16.286
SRR9715741Leave21.181
SRR9715739Root76.461
SRR9715742Root49.140
SRR9715743Root53.227

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.698
SRR8749028MeJA induced 9h14.382
SRR8749029MeJA induced 9h12.772
SRR8749030Uninduced9.649
SRR8749031Uninduced8.856
SRR8749032Uninduced7.582

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.093
SRR8400027Control-Root56.736

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved