Gene detail information of Glyur000135s00007327.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06600.10ubiquitin-specific protease 12
NRXP_003545531.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max]
COGYP_007675.15.00E-06hypothetical protein pc0676 [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|Q9FPT1|UBP12_ARATH0Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|I1M7D1|I1M7D1_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00135290498306158+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0005515  protein binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000135s00007327.3PF00917.21MATH1302482.70E-20
Glyur000135s00007327.3PF00443.24UCH2675422.50E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.152
SRR1783600control39.402
SRR1783602moderate drought stress38.860
SRR1811619moderate drought stress38.659

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.855
DRR006520Root Summer glycyrrhizin high producing strain40.186
DRR006521Root Winter glycyrrhizin high producing strain46.515
DRR006522Root Winter glycyrrhizin high producing strain44.830
DRR006523Root Summer glycyrrhizin low producing strain35.883
DRR006524Root Summer glycyrrhizin low producing strain36.103
DRR006525Leaf Summer glycyrrhizin high producing strain23.528
DRR006526Leaf Summer glycyrrhizin high producing strain23.437

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.173
SRR2868004Drought Stress(Tissue:root)50.191
SRR2967015Control (Tissue:root)47.482

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.405
SRR9715740Leave30.336
SRR9715741Leave36.206
SRR9715739Root5.325
SRR9715742Root37.901
SRR9715743Root32.442

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.023
SRR8749028MeJA induced 9h41.735
SRR8749029MeJA induced 9h21.071
SRR8749030Uninduced18.713
SRR8749031Uninduced18.234
SRR8749032Uninduced12.547

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root54.609
SRR8400027Control-Root51.819

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved