Gene detail information of Glyur000136s00007928.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22310.1 | 9.00E-23 | methyl-CPG-binding domain 8 |
| NR | XP_004485590.1 | 0 | PREDICTED: uncharacterized protein LOC101489448 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LME6|MBD8_ARATH | 3.00E-34 | Methyl-CpG-binding domain-containing protein 8 |
| trEMBL | tr|V7BR06|V7BR06_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW20399.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 161436 | 165901 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.517 |
| SRR1783600 | control | 15.704 |
| SRR1783602 | moderate drought stress | 20.502 |
| SRR1811619 | moderate drought stress | 20.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.494 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.360 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.157 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.679 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.494 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.416 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.877 |
| SRR2967015 | Control (Tissue:root) | 22.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.704 |
| SRR9715740 | Leave | 11.747 |
| SRR9715741 | Leave | 12.868 |
| SRR9715739 | Root | 11.992 |
| SRR9715742 | Root | 18.901 |
| SRR9715743 | Root | 18.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.062 |
| SRR8749028 | MeJA induced 9h | 13.403 |
| SRR8749029 | MeJA induced 9h | 8.141 |
| SRR8749030 | Uninduced | 5.624 |
| SRR8749031 | Uninduced | 3.176 |
| SRR8749032 | Uninduced | 3.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.804 |
| SRR8400027 | Control-Root | 19.456 |