Gene detail information of Glyur000136s00007934.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33510.103-deoxy-d-arabino-heptulosonate 7-phosphate synthase
NRXP_003545685.10PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Glycine max]
COGYP_420582.103-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Magnetospirillum magneticum AMB-1]
Swissprottr|Q00218|AROG_ARATH0Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor)
trEMBLtr|G7IPJ9|G7IPJ9_MEDTR0Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:AES63472.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00136196307200071-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000136s00007934.1PF01474.11DAHP_synth_2544911.80E-198


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control90.385
SRR1783600control92.651
SRR1783602moderate drought stress190.627
SRR1811619moderate drought stress189.921

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain138.154
DRR006520Root Summer glycyrrhizin high producing strain136.684
DRR006521Root Winter glycyrrhizin high producing strain297.587
DRR006522Root Winter glycyrrhizin high producing strain290.396
DRR006523Root Summer glycyrrhizin low producing strain213.144
DRR006524Root Summer glycyrrhizin low producing strain213.935
DRR006525Leaf Summer glycyrrhizin high producing strain128.573
DRR006526Leaf Summer glycyrrhizin high producing strain124.244

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)89.244
SRR2868004Drought Stress(Tissue:root)104.017
SRR2967015Control (Tissue:root)176.257

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.817
SRR9715740Leave102.923
SRR9715741Leave89.475
SRR9715739Root86.308
SRR9715742Root78.215
SRR9715743Root74.223

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h96.702
SRR8749028MeJA induced 9h133.359
SRR8749029MeJA induced 9h84.996
SRR8749030Uninduced56.408
SRR8749031Uninduced34.850
SRR8749032Uninduced67.839

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.944
SRR8400027Control-Root73.146

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved