Gene detail information of Glyur000136s00007945.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64300.10GTP cyclohydrolase II
NRXP_003545697.10PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like [Glycine max]
COGYP_003709448.103,4-dihydroxy-2-butanone 4-phosphate synthase [Waddlia chondrophila WSU 86-1044]
Swissprottr|P47924|RIBA1_ARATH0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|I1MDY7|I1MDY7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G06120.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00136245187249688+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14652ribBA EC:4.1.99.12 3.5.4.25 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process


molecular_function

GO:0003935  GTP cyclohydrolase II activity

GO:0008686  3,4-dihydroxy-2-butanone-4-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000136s00007945.1PF00926.14DHBP_synthase1153109.10E-83
Glyur000136s00007945.1PF00925.15GTP_cyclohydro23174862.00E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.880
SRR1783600control11.027
SRR1783602moderate drought stress7.623
SRR1811619moderate drought stress7.537

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.633
DRR006520Root Summer glycyrrhizin high producing strain17.177
DRR006521Root Winter glycyrrhizin high producing strain10.629
DRR006522Root Winter glycyrrhizin high producing strain10.468
DRR006523Root Summer glycyrrhizin low producing strain47.549
DRR006524Root Summer glycyrrhizin low producing strain47.798
DRR006525Leaf Summer glycyrrhizin high producing strain8.451
DRR006526Leaf Summer glycyrrhizin high producing strain8.420

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)121.631
SRR2868004Drought Stress(Tissue:root)113.532
SRR2967015Control (Tissue:root)60.003

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.660
SRR9715740Leave40.692
SRR9715741Leave53.922
SRR9715739Root54.685
SRR9715742Root133.649
SRR9715743Root121.121

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h93.904
SRR8749028MeJA induced 9h139.471
SRR8749029MeJA induced 9h129.848
SRR8749030Uninduced373.348
SRR8749031Uninduced387.893
SRR8749032Uninduced243.484

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.578
SRR8400027Control-Root66.499

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved