Gene detail information of Glyur000136s00007950.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72220.1 | 2.00E-39 | RING/U-box superfamily protein |
| NR | AFK33981.1 | 7.54E-147 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LFY8|ATL54_ARATH | 2.00E-47 | RING-H2 finger protein ATL54 |
| trEMBL | tr|I3S139|I3S139_LOTJA | 3.00E-147 | Uncharacterized protein {ECO:0000313|EMBL:AFK33981.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 262665 | 263852 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000136s00007950.1 | PF13639.1 | zf-RING_2 | 169 | 212 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.670 |
| SRR1783600 | control | 4.538 |
| SRR1783602 | moderate drought stress | 3.391 |
| SRR1811619 | moderate drought stress | 3.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.947 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.232 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.494 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.812 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.098 |
| SRR2967015 | Control (Tissue:root) | 15.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.312 |
| SRR9715740 | Leave | 23.497 |
| SRR9715741 | Leave | 40.831 |
| SRR9715739 | Root | 11.392 |
| SRR9715742 | Root | 13.606 |
| SRR9715743 | Root | 13.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.230 |
| SRR8749028 | MeJA induced 9h | 36.380 |
| SRR8749029 | MeJA induced 9h | 34.488 |
| SRR8749030 | Uninduced | 33.952 |
| SRR8749031 | Uninduced | 65.986 |
| SRR8749032 | Uninduced | 62.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.181 |
| SRR8400027 | Control-Root | 12.667 |