Gene detail information of Glyur000136s00007951.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57150.10homologue of NAP57
NRXP_004505757.10PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cicer arietinum]
COGYP_004004442.13.00E-92tRNA pseudouridine synthase b [Methanothermus fervidus DSM 2088]
Swissprottr|Q9LD90|CBF5_ARATH0H/ACA ribonucleoprotein complex subunit 4
trEMBLtr|A0A072ULA4|A0A072ULA4_MEDTR0Centromere/microtubule-binding protein {ECO:0000313|EMBL:KEH30544.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00136265356267176-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11131DKC1, NOLA4, CBF5 EC:5.4.99.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0001522  pseudouridine synthesis

GO:0006396  RNA processing

GO:0009451  RNA modification


molecular_function

GO:0003723  RNA binding

GO:0009982  pseudouridine synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000136s00007951.1PF08068.7DKCLD491062.60E-31
Glyur000136s00007951.1PF01509.13TruB_N1102261.30E-20
Glyur000136s00007951.1PF01472.15PUA2973697.60E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.921
SRR1783600control65.682
SRR1783602moderate drought stress86.053
SRR1811619moderate drought stress82.530

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain94.951
DRR006520Root Summer glycyrrhizin high producing strain96.767
DRR006521Root Winter glycyrrhizin high producing strain28.160
DRR006522Root Winter glycyrrhizin high producing strain27.589
DRR006523Root Summer glycyrrhizin low producing strain109.818
DRR006524Root Summer glycyrrhizin low producing strain104.269
DRR006525Leaf Summer glycyrrhizin high producing strain30.560
DRR006526Leaf Summer glycyrrhizin high producing strain30.722

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)110.527
SRR2868004Drought Stress(Tissue:root)73.705
SRR2967015Control (Tissue:root)70.539

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.317
SRR9715740Leave35.275
SRR9715741Leave21.984
SRR9715739Root7.856
SRR9715742Root69.045
SRR9715743Root57.515

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h184.133
SRR8749028MeJA induced 9h53.718
SRR8749029MeJA induced 9h79.085
SRR8749030Uninduced7.936
SRR8749031Uninduced2.430
SRR8749032Uninduced7.632

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root70.274
SRR8400027Control-Root60.968

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved