Gene detail information of Glyur000136s00007955.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01320.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NRKHN26768.10Pyruvate decarboxylase isozyme 2 [Glycine soja]
COGYP_007568556.13.00E-149Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprottr|A2Y5L9|PDC1_ORYSI0Pyruvate decarboxylase 1
trEMBLtr|I1KUA8|I1KUA8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G18830.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00136284153287067+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01568PDC, pdc EC:4.1.1.1 Glycolysis / Gluconeogenesis map00010


Gene Ontology

molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0030976  thiamine pyrophosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000136s00007955.1PF02776.13TPP_enzyme_N381412.40E-25
Glyur000136s00007955.1PF00205.17TPP_enzyme_M1973052.80E-15
Glyur000136s00007955.1PF02775.16TPP_enzyme_C4095271.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.062
SRR1783600control0.043
SRR1783602moderate drought stress0.038
SRR1811619moderate drought stress0.052

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.056
DRR006522Root Winter glycyrrhizin high producing strain0.054
DRR006523Root Summer glycyrrhizin low producing strain0.055
DRR006524Root Summer glycyrrhizin low producing strain0.055
DRR006525Leaf Summer glycyrrhizin high producing strain10.087
DRR006526Leaf Summer glycyrrhizin high producing strain10.222

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.299
SRR2868004Drought Stress(Tissue:root)0.125
SRR2967015Control (Tissue:root)0.038

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.957
SRR9715740Leave6.896
SRR9715741Leave2.340
SRR9715739Root0.076
SRR9715742Root0.029
SRR9715743Root0.030

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.047
SRR8749028MeJA induced 9h0.236
SRR8749029MeJA induced 9h0.269
SRR8749030Uninduced0.122
SRR8749031Uninduced0.205
SRR8749032Uninduced0.446

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.302
SRR8400027Control-Root0.852