Gene detail information of Glyur000136s00007955.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G01320.1 | 0 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
NR | KHN26768.1 | 0 | Pyruvate decarboxylase isozyme 2 [Glycine soja] |
COG | YP_007568556.1 | 3.00E-149 | Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
Swissprot | tr|A2Y5L9|PDC1_ORYSI | 0 | Pyruvate decarboxylase 1 |
trEMBL | tr|I1KUA8|I1KUA8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G18830.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00136 | 284153 | 287067 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01568 | PDC, pdc | EC:4.1.1.1 | Glycolysis / Gluconeogenesis | map00010 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000136s00007955.1 | PF02776.13 | TPP_enzyme_N | 38 | 141 | 2.40E-25 |
Glyur000136s00007955.1 | PF00205.17 | TPP_enzyme_M | 197 | 305 | 2.80E-15 |
Glyur000136s00007955.1 | PF02775.16 | TPP_enzyme_C | 409 | 527 | 1.20E-15 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.062 |
SRR1783600 | control | 0.043 |
SRR1783602 | moderate drought stress | 0.038 |
SRR1811619 | moderate drought stress | 0.052 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.055 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.055 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.087 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.222 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.299 |
SRR2868004 | Drought Stress(Tissue:root) | 0.125 |
SRR2967015 | Control (Tissue:root) | 0.038 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 7.957 |
SRR9715740 | Leave | 6.896 |
SRR9715741 | Leave | 2.340 |
SRR9715739 | Root | 0.076 |
SRR9715742 | Root | 0.029 |
SRR9715743 | Root | 0.030 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.047 |
SRR8749028 | MeJA induced 9h | 0.236 |
SRR8749029 | MeJA induced 9h | 0.269 |
SRR8749030 | Uninduced | 0.122 |
SRR8749031 | Uninduced | 0.205 |
SRR8749032 | Uninduced | 0.446 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.302 |
SRR8400027 | Control-Root | 0.852 |