Gene detail information of Glyur000137s00013317.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25220.24.00E-134KNOTTED1-like homeobox gene 3
NRXP_007136984.10hypothetical protein PHAVU_009G090500g [Phaseolus vulgaris]
Swissprottr|O04136|KNAP3_MALDO0Homeobox protein knotted-1-like 3
trEMBLtr|V7AWI0|V7AWI0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW08978.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001376226766328+


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000137s00013317.1PF03790.8KNOX11642054.90E-18
Glyur000137s00013317.1PF03791.8KNOX22162672.80E-22
Glyur000137s00013317.1PF05920.6Homeobox_KN3533922.90E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.038
SRR1783600control7.181
SRR1783602moderate drought stress9.318
SRR1811619moderate drought stress8.957

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.235
DRR006520Root Summer glycyrrhizin high producing strain7.177
DRR006521Root Winter glycyrrhizin high producing strain14.579
DRR006522Root Winter glycyrrhizin high producing strain13.990
DRR006523Root Summer glycyrrhizin low producing strain13.330
DRR006524Root Summer glycyrrhizin low producing strain13.314
DRR006525Leaf Summer glycyrrhizin high producing strain30.327
DRR006526Leaf Summer glycyrrhizin high producing strain30.093

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.884
SRR2868004Drought Stress(Tissue:root)9.193
SRR2967015Control (Tissue:root)8.870

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.182
SRR9715740Leave18.673
SRR9715741Leave31.438
SRR9715739Root8.527
SRR9715742Root42.007
SRR9715743Root34.482

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.959
SRR8749028MeJA induced 9h124.234
SRR8749029MeJA induced 9h55.362
SRR8749030Uninduced22.756
SRR8749031Uninduced12.862
SRR8749032Uninduced17.673

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.509
SRR8400027Control-Root25.103

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved