Gene detail information of Glyur000137s00013328.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G31170.10Cysteinyl-tRNA synthetase, class Ia family protein
NRXP_004501354.10PREDICTED: cysteine--tRNA ligase-like isoform X1 [Cicer arietinum]
COGYP_004625616.12.00E-158cysteinyl-tRNA synthetase [Thermodesulfatator indicus DSM 15286]
trEMBLtr|G7JAF7|G7JAF7_MEDTR0Cysteinyl-tRNA synthetase {ECO:0000313|EMBL:AES73596.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00137139271143759-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01883CARS, cysS EC:6.1.1.16 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006423  cysteinyl-tRNA aminoacylation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004817  cysteine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000137s00013328.1PF01406.14tRNA-synt_1e943889.20E-125


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.930
SRR1783600control5.869
SRR1783602moderate drought stress6.211
SRR1811619moderate drought stress6.411

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.823
DRR006520Root Summer glycyrrhizin high producing strain6.932
DRR006521Root Winter glycyrrhizin high producing strain4.859
DRR006522Root Winter glycyrrhizin high producing strain4.609
DRR006523Root Summer glycyrrhizin low producing strain6.781
DRR006524Root Summer glycyrrhizin low producing strain6.845
DRR006525Leaf Summer glycyrrhizin high producing strain14.436
DRR006526Leaf Summer glycyrrhizin high producing strain13.979

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.061
SRR2868004Drought Stress(Tissue:root)8.517
SRR2967015Control (Tissue:root)8.470

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.933
SRR9715740Leave18.643
SRR9715741Leave11.423
SRR9715739Root1.853
SRR9715742Root6.142
SRR9715743Root3.677

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.834
SRR8749028MeJA induced 9h13.566
SRR8749029MeJA induced 9h10.716
SRR8749030Uninduced17.395
SRR8749031Uninduced4.890
SRR8749032Uninduced4.248

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.726
SRR8400027Control-Root11.954

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved