Gene detail information of Glyur000138s00011653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01920.1 | 2.00E-161 | Protein kinase superfamily protein |
| NR | XP_007140065.1 | 0 | hypothetical protein PHAVU_008G081300g [Phaseolus vulgaris] |
| COG | NP_864467.1 | 2.00E-09 | serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q9LZV4|STN8_ARATH | 0 | Serine/threonine-protein kinase STN8, chloroplastic (Precursor) |
| trEMBL | tr|V7B3B8|V7B3B8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 20142 | 24763 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011653.1 | PF00069.20 | Pkinase | 141 | 475 | 2.10E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.778 |
| SRR1783600 | control | 1.818 |
| SRR1783602 | moderate drought stress | 0.699 |
| SRR1811619 | moderate drought stress | 0.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.044 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.543 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.236 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.757 |
| SRR2967015 | Control (Tissue:root) | 4.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.810 |
| SRR9715740 | Leave | 20.494 |
| SRR9715741 | Leave | 7.621 |
| SRR9715739 | Root | 0.314 |
| SRR9715742 | Root | 7.717 |
| SRR9715743 | Root | 7.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.099 |
| SRR8749028 | MeJA induced 9h | 0.054 |
| SRR8749029 | MeJA induced 9h | 0.088 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.980 |
| SRR8400027 | Control-Root | 2.993 |