Gene detail information of Glyur000138s00011654.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01930.1 | 3.00E-66 | Glycosyl hydrolase superfamily protein |
| NR | XP_004492573.1 | 2.15E-108 | PREDICTED: mannan endo-1,4-beta-mannosidase 6-like [Cicer arietinum] |
| COG | YP_003324408.1 | 1.00E-22 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q9LZV3|MAN6_ARATH | 2.00E-86 | Mannan endo-1,4-beta-mannosidase 6 (Precursor) |
| trEMBL | tr|I1N3A5|I1N3A5_SOYBN | 2.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G44810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 23935 | 27149 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19355 | MAN | EC:3.2.1.78 | Fructose and mannose metabolism | map00051 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.995 |
| SRR1783600 | control | 2.077 |
| SRR1783602 | moderate drought stress | 1.548 |
| SRR1811619 | moderate drought stress | 1.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.992 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.910 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.499 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.136 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.173 |
| SRR2967015 | Control (Tissue:root) | 17.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.549 |
| SRR9715740 | Leave | 2.124 |
| SRR9715741 | Leave | 1.715 |
| SRR9715739 | Root | 0.616 |
| SRR9715742 | Root | 39.951 |
| SRR9715743 | Root | 31.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.055 |
| SRR8749028 | MeJA induced 9h | 0.001 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.008 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.991 |
| SRR8400027 | Control-Root | 13.339 |