Gene detail information of Glyur000138s00011662.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41700.58.00E-81ubiquitin conjugating enzyme 8
NRXP_003534631.15.05E-102PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max]
COGYP_008797956.19.00E-24ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35131|UBC8_ARATH7.00E-103Ubiquitin-conjugating enzyme E2 8
trEMBLtr|I3SLL2|I3SLL2_LOTJA2.00E-102Uncharacterized protein {ECO:0000313|EMBL:AFK41154.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001386425068481-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06689UBE2D, UBC4, UBC5 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000138s00011662.1PF00179.21UQ_con51563.30E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control731.883
SRR1783600control740.882
SRR1783602moderate drought stress2058.734
SRR1811619moderate drought stress2052.938

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1314.021
DRR006520Root Summer glycyrrhizin high producing strain1303.219
DRR006521Root Winter glycyrrhizin high producing strain750.340
DRR006522Root Winter glycyrrhizin high producing strain731.227
DRR006523Root Summer glycyrrhizin low producing strain1187.657
DRR006524Root Summer glycyrrhizin low producing strain1183.924
DRR006525Leaf Summer glycyrrhizin high producing strain213.335
DRR006526Leaf Summer glycyrrhizin high producing strain214.496

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)326.363
SRR2868004Drought Stress(Tissue:root)450.878
SRR2967015Control (Tissue:root)466.738

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave266.432
SRR9715740Leave254.497
SRR9715741Leave269.244
SRR9715739Root823.520
SRR9715742Root403.207
SRR9715743Root473.794

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h445.156
SRR8749028MeJA induced 9h327.087
SRR8749029MeJA induced 9h444.467
SRR8749030Uninduced410.707
SRR8749031Uninduced393.634
SRR8749032Uninduced487.429

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root441.771
SRR8400027Control-Root435.492

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved