Gene detail

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Gene detail information of Glyur000138s00011664.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58300.2	5.00E-171	Leucine-rich repeat protein kinase family protein
NR	XP_006587908.1	0	PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max]
COG	YP_004775215.1	7.00E-18	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|K7LGE5\|K7LGE5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G40941.2}

Sequence

Transcript Sequence

>Glyur000138s00011664.1
ATGATGCCACAGTCTCACTTTGCCATTGNCACTATACCAATCTTTCTACTACTTTTTGTGTTTCCTCAAACTAATAAAGCTGATCTACATTCAGAAAAGCAAGCACTCCTTAACTTTGCTGCAGAAGTTCATCATGGTGGAAAAGTCAATTGGAGCTCTAGTACCTCAGTCTGCACTTCTTGGGTGGGAGTTACATGCAGCCCTGATGGCTCCCATGTGCATTCTTTGCGGCTTCCGGGTGTTGGACTTCGCGGTTCTCTCCCGGGAAACACCCTTGGTAAGCTAAAGGGACTCATCAGTCTCAGTCTTAGGTCCAACAGCTTGAGTGGGAGCCTTCCAAGTGACATACTTTCCCTCCCTTCTCTACGCTTTATATATCTGCAGCACAACAACTTCTCAGGTGATATTCCTGACGATTTGCCGCCCCGGCTTGTCTTTCTTGATTTGTCATACAACTCCTTCACAGGACAAATTCCAGGCACAATCATGAACTTGACATATCTAATAGGACTGAACCTCCAAAACAACTCTCTGAGAGGACCTATTCCTGATGTTAACCTTCCTAACCTTAAGGATTTGGATTTTAGCTTCAACTACCTAAATGGTTCAATTCCTGCAGGGCTCCATATGTTCCNTGCCTCCTCATTTAGGGGGAATTTGATGTTATGTGGAGCACCTTTGGAACAGTGTTCTTCAGTTTCCCCTACTCCCCCCATATTGTCTCCAACCACAGTCTCCCAAAAACCAAGTGATCTCTCAAGCAAGAAGCTGAGTACAGGGCCAAAAATTGCCATTGCTTTGGGGGTTTCTGCACTTCTGTTTCTTCCAGTTCTTGTAGCAGTGTTCTGCTGTTTCAAGAAAAAAGTAGGTGAACAAAATGTAGCAGCACCTAAAAAGAAGGGGGAGAAGCTTAGGGAGGGCTTTGGGAGTGGTGTGCAAGAACCTGAGAGGAACAAGCTAATGTTTTTTGGAGGGTGTTCTTATAATTTTGATCTTGAGGATTTGTTAAGAGCCTCAGCTGAAGTGCTTGGGAAGGGAAGCTGTGGAACAACTTATAAGGCCATCTTGGAGGAGGGGACAACAGTGGTTGTGAAGAGGGTAAAAGAAGTGGCTGTGGGGAAAAAGGAATTTGAACAGCAAATGGAGATTGTCCAAAGGCTTGATCACCACCCAAATGTGGTTCCCCTTCGTGCTTACTATTATTCCAAGGATGAAAAACTAATGGTTTACGACTACTTCACAGCTGGAAGCTTTTCCAAGTTATTGCATGAGATGGTTATTATCTGCATTGCCATTTGCTGGTTTTCTCATTCCTCCTACTATGTCATGGGAAACATGGTGACAGGAACAAGGGAAACTGGACGAACTCCACTAGATTGGGATTCCAGATTGAAGATCATGGCCGGCGCGGCTAGGGGCATTGCCCATATCCACTCAGCCAATGGAAGGAAATTTGTCCATGGCAACATAAAATCATCTAATGTGCTTCTCTCAATAGATCTTCAAGGCTGCATATCAGATTTTGGCCTAACTCCTCTAACAAGTTTCTGTGTCTCCCCAAGAAGCCCAGGCTACAGGGCACCTGAGGCCATTGAAAGCAGAAAATCTACCCAAAAATCTGATGTATACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAGACACCAGTTCAGTATTCAGGGCATGATGATGCGGTTGATCTTCCAAGGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTATTTGATCTTGAGCTGATGAGATATTCAAACATTGAGGAAGAACTGGTGCAGATGTTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACACAAGACCTTCAATGGAGGAAGTTGTTAGGATAATTGAAGACATGAGAGCAGCCATTGATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00138	78599	80958	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000138s00011664.1	PF08263.7	LRRNT_2	30	67	9.60E-08
Glyur000138s00011664.1	PF12799.2	LRR_4	97	137	1.80E-06
Glyur000138s00011664.1	PF00560.28	LRR_1	144	165	0.67
Glyur000138s00011664.1	PF00069.20	Pkinase	341	626	2.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.108
SRR1783600	control	0.136
SRR1783602	moderate drought stress	0.296
SRR1811619	moderate drought stress	0.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.283
DRR006520	Root Summer glycyrrhizin high producing strain	0.341
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.173
DRR006524	Root Summer glycyrrhizin low producing strain	0.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.398
SRR2868004	Drought Stress(Tissue:root)	0.478
SRR2967015	Control (Tissue:root)	0.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.931
SRR9715740	Leave	0.958
SRR9715741	Leave	0.464
SRR9715739	Root	0.321
SRR9715742	Root	0.413
SRR9715743	Root	0.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.063
SRR8749028	MeJA induced 9h	0.264
SRR8749029	MeJA induced 9h	0.556
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.476
SRR8400027	Control-Root	0.520