Gene detail information of Glyur000138s00011667.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23660.2 | 7.00E-110 | polyprenyltransferase 1 |
| NR | XP_003623641.1 | 0 | Para-hydroxybenzoate-polyprenyltransferase [Medicago truncatula] |
| COG | YP_005032303.1 | 3.00E-101 | 4-hydroxybenzoate-octaprenyl transferase [Azospirillum brasilense Sp245] |
| Swissprot | tr|Q93YP7|4HPT_ARATH | 4.00E-167 | 4-hydroxybenzoate polyprenyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|G7KY71|G7KY71_MEDTR | 0 | 4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:AES79859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 106898 | 116753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06125 | COQ2 | EC:2.5.1.39 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011667.1 | PF01040.13 | UbiA | 137 | 389 | 4.70E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.897 |
| SRR1783600 | control | 4.107 |
| SRR1783602 | moderate drought stress | 4.777 |
| SRR1811619 | moderate drought stress | 4.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.443 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.022 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.161 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.142 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.146 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.822 |
| SRR2967015 | Control (Tissue:root) | 9.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.273 |
| SRR9715740 | Leave | 6.090 |
| SRR9715741 | Leave | 5.785 |
| SRR9715739 | Root | 2.160 |
| SRR9715742 | Root | 4.690 |
| SRR9715743 | Root | 3.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.360 |
| SRR8749028 | MeJA induced 9h | 6.297 |
| SRR8749029 | MeJA induced 9h | 3.631 |
| SRR8749030 | Uninduced | 2.460 |
| SRR8749031 | Uninduced | 2.209 |
| SRR8749032 | Uninduced | 1.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.546 |
| SRR8400027 | Control-Root | 9.900 |