Gene detail information of Glyur000138s00011668.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08570.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_006602728.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At3g08570-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C9Z7|Y3857_ARATH | 0 | BTB/POZ domain-containing protein At3g08570 |
| trEMBL | tr|K7LGE1|K7LGE1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G40910.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 114825 | 117933 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011668.1 | PF00651.26 | BTB | 38 | 138 | 3.50E-06 |
| Glyur000138s00011668.1 | PF03000.9 | NPH3 | 210 | 467 | 2.30E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.375 |
| SRR1783600 | control | 2.276 |
| SRR1783602 | moderate drought stress | 1.946 |
| SRR1811619 | moderate drought stress | 1.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.227 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.063 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.923 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.816 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.034 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.065 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.810 |
| SRR2967015 | Control (Tissue:root) | 3.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.456 |
| SRR9715740 | Leave | 1.324 |
| SRR9715741 | Leave | 0.271 |
| SRR9715739 | Root | 1.462 |
| SRR9715742 | Root | 2.076 |
| SRR9715743 | Root | 1.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.089 |
| SRR8749028 | MeJA induced 9h | 0.415 |
| SRR8749029 | MeJA induced 9h | 0.234 |
| SRR8749030 | Uninduced | 0.095 |
| SRR8749031 | Uninduced | 0.268 |
| SRR8749032 | Uninduced | 0.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.209 |
| SRR8400027 | Control-Root | 3.139 |