Gene detail information of Glyur000138s00011669.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32070.3 | 6.00E-82 | nuclear shuttle interacting |
| NR | KHN29481.1 | 2.99E-162 | Acetyltransferase NSI [Glycine soja] |
| COG | YP_007128243.1 | 8.00E-61 | GCN5-related N-acetyltransferase [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q7X9V3|NSI_ARATH | 2.00E-102 | Acetyltransferase NSI |
| trEMBL | tr|V7B399|V7B399_PHAVU | 5.00E-158 | Uncharacterized protein {ECO:0000313|EMBL:ESW12040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 121619 | 126673 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GNAT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011669.1 | PF00583.19 | Acetyltransf_1 | 163 | 235 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.261 |
| SRR1783600 | control | 6.317 |
| SRR1783602 | moderate drought stress | 8.918 |
| SRR1811619 | moderate drought stress | 9.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.939 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.835 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.696 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.351 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.505 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.706 |
| SRR2967015 | Control (Tissue:root) | 7.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.347 |
| SRR9715740 | Leave | 50.305 |
| SRR9715741 | Leave | 27.164 |
| SRR9715739 | Root | 4.707 |
| SRR9715742 | Root | 3.374 |
| SRR9715743 | Root | 4.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.203 |
| SRR8749028 | MeJA induced 9h | 7.255 |
| SRR8749029 | MeJA induced 9h | 5.189 |
| SRR8749030 | Uninduced | 1.557 |
| SRR8749031 | Uninduced | 0.618 |
| SRR8749032 | Uninduced | 1.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.836 |
| SRR8400027 | Control-Root | 11.945 |