Gene detail information of Glyur000138s00011681.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG00270.1 | 6.00E-13 | photosystem II reaction center protein D |
| NR | YP_009028131.1 | 6.02E-14 | photosystem II protein D2 (chloroplast) [Couepia guianensis] |
| Swissprot | tr|Q06J67|PSBD_BIGNA | 5.00E-16 | Photosystem II D2 protein {ECO:0000255|HAMAP-Rule:MF_01383} |
| trEMBL | tr|A0A023T0X3|A0A023T0X3_9ROSI | 2.00E-14 | Photosystem II D2 protein {ECO:0000256|HAMAP-Rule:MF_01383} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 169253 | 171149 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02706 | psbD | EC:1.10.3.9 | Photosynthesis | map00195 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.672 |
| SRR1783600 | control | 1.438 |
| SRR1783602 | moderate drought stress | 4.009 |
| SRR1811619 | moderate drought stress | 4.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.927 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.835 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.450 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.547 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.323 |
| SRR2967015 | Control (Tissue:root) | 1.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.363 |
| SRR9715740 | Leave | 0.502 |
| SRR9715741 | Leave | 0.592 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.193 |
| SRR9715743 | Root | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.812 |
| SRR8749028 | MeJA induced 9h | 2.416 |
| SRR8749029 | MeJA induced 9h | 1.748 |
| SRR8749030 | Uninduced | 5.770 |
| SRR8749031 | Uninduced | 1.329 |
| SRR8749032 | Uninduced | 1.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.941 |
| SRR8400027 | Control-Root | 2.505 |