Gene detail information of Glyur000138s00011683.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01960.1 | 1.00E-153 | RING/U-box superfamily protein |
| NR | XP_004492595.1 | 0 | PREDICTED: RING finger and transmembrane domain-containing protein 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q6NPT7|HRD1B_ARATH | 5.00E-11 | ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305} |
| trEMBL | tr|G7KY88|G7KY88_MEDTR | 0 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES79876.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 198557 | 203968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011683.1 | PF13639.1 | zf-RING_2 | 383 | 422 | 9.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.282 |
| SRR1783600 | control | 33.618 |
| SRR1783602 | moderate drought stress | 56.217 |
| SRR1811619 | moderate drought stress | 56.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.583 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.025 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 92.567 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 88.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 44.069 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.643 |
| SRR2868004 | Drought Stress(Tissue:root) | 49.166 |
| SRR2967015 | Control (Tissue:root) | 58.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.756 |
| SRR9715740 | Leave | 34.686 |
| SRR9715741 | Leave | 37.540 |
| SRR9715739 | Root | 36.329 |
| SRR9715742 | Root | 41.221 |
| SRR9715743 | Root | 39.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.066 |
| SRR8749028 | MeJA induced 9h | 35.114 |
| SRR8749029 | MeJA induced 9h | 27.773 |
| SRR8749030 | Uninduced | 19.524 |
| SRR8749031 | Uninduced | 23.047 |
| SRR8749032 | Uninduced | 26.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 50.532 |
| SRR8400027 | Control-Root | 48.009 |