Gene detail information of Glyur000138s00011687.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01980.1 | 7.00E-99 | RING/U-box superfamily protein |
| NR | KHN40594.1 | 0 | E3 ubiquitin-protein ligase RING1 [Glycine soja] |
| Swissprot | tr|P0CH30|RING1_GOSHI | 6.00E-31 | E3 ubiquitin-protein ligase RING1 |
| trEMBL | tr|K7MTX7|K7MTX7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G45040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 211321 | 214086 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011687.1 | PF13639.1 | zf-RING_2 | 382 | 424 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.362 |
| SRR1783600 | control | 10.450 |
| SRR1783602 | moderate drought stress | 10.684 |
| SRR1811619 | moderate drought stress | 10.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.483 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.730 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.024 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.817 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.684 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.021 |
| SRR2967015 | Control (Tissue:root) | 19.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.374 |
| SRR9715740 | Leave | 15.235 |
| SRR9715741 | Leave | 17.915 |
| SRR9715739 | Root | 10.786 |
| SRR9715742 | Root | 16.844 |
| SRR9715743 | Root | 13.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.804 |
| SRR8749028 | MeJA induced 9h | 17.358 |
| SRR8749029 | MeJA induced 9h | 17.200 |
| SRR8749030 | Uninduced | 19.813 |
| SRR8749031 | Uninduced | 16.373 |
| SRR8749032 | Uninduced | 14.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.570 |
| SRR8400027 | Control-Root | 13.397 |