Gene detail information of Glyur000139s00009261.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45710.1 | 8.00E-41 | winged-helix DNA-binding transcription factor family protein |
| NR | AGJ83756.1 | 7.31E-93 | heat stress transcription factor A-4a-like protein [Caragana korshinskii] |
| Swissprot | tr|Q9FK72|HFA4C_ARATH | 2.00E-69 | Heat stress transcription factor A-4c |
| trEMBL | tr|R9R6C4|R9R6C4_9FABA | 3.00E-93 | Heat stress transcription factor A-4a-like protein {ECO:0000313|EMBL:AGJ83756.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00139 | 134 | 961 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000139s00009261.1 | PF00447.12 | HSF_DNA-bind | 16 | 93 | 4.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.042 |
| SRR1783600 | control | 0.022 |
| SRR1783602 | moderate drought stress | 0.017 |
| SRR1811619 | moderate drought stress | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.224 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.155 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.379 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.016 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.072 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |