Gene detail information of Glyur000139s00009279.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13980.20Glycosyl hydrolase family 38 protein
NRXP_004501750.10PREDICTED: lysosomal alpha-mannosidase-like isoform X1 [Cicer arietinum]
COGYP_005368251.15.00E-09alpha-mannosidase [Corallococcus coralloides DSM 2259]
Swissprottr|C0HJB3|MANA_CANEN0Alpha-mannosidase, light subunit {ECO:0000303|PubMed:24221485}
trEMBLtr|I1JXQ5|I1JXQ5_SOYBN0Alpha-mannosidase {ECO:0000256|RuleBase:RU361199}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0013993890105433+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH38


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01191E3.2.1.24 EC:3.2.1.24 Other glycan degradation map00511


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006013  mannose metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004559  alpha-mannosidase activity

GO:0008270  zinc ion binding

GO:0015923  mannosidase activity

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000139s00009279.4PF01074.17Glyco_hydro_381203283.90E-42
Glyur000139s00009279.4PF09261.6Alpha-mann_mid3344073.40E-20
Glyur000139s00009279.4PF07748.8Glyco_hydro_38C4439591.20E-101


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.750
SRR1783600control16.833
SRR1783602moderate drought stress17.447
SRR1811619moderate drought stress17.297

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.854
DRR006520Root Summer glycyrrhizin high producing strain16.430
DRR006521Root Winter glycyrrhizin high producing strain0.232
DRR006522Root Winter glycyrrhizin high producing strain0.182
DRR006523Root Summer glycyrrhizin low producing strain4.664
DRR006524Root Summer glycyrrhizin low producing strain4.789
DRR006525Leaf Summer glycyrrhizin high producing strain5.459
DRR006526Leaf Summer glycyrrhizin high producing strain5.690

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.677
SRR2868004Drought Stress(Tissue:root)9.893
SRR2967015Control (Tissue:root)11.960

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.436
SRR9715740Leave1.284
SRR9715741Leave3.113
SRR9715739Root1.935
SRR9715742Root10.281
SRR9715743Root9.605

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.388
SRR8749028MeJA induced 9h10.240
SRR8749029MeJA induced 9h6.321
SRR8749030Uninduced7.450
SRR8749031Uninduced5.319
SRR8749032Uninduced5.890

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.016
SRR8400027Control-Root15.274

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved