Gene detail information of Glyur000139s00009285.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26744.4 | 5.00E-88 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004501748.1 | 0 | PREDICTED: transcription factor ICE1-like [Cicer arietinum] |
| Swissprot | tr|Q9LSE2|ICE1_ARATH | 5.00E-137 | Transcription factor ICE1 |
| trEMBL | tr|A0A072V0Y6|A0A072V0Y6_MEDTR | 0 | BHLH transcriptional factor {ECO:0000313|EMBL:KEH35684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00139 | 141075 | 144362 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000139s00009285.1 | PF00010.21 | HLH | 323 | 365 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.410 |
| SRR1783600 | control | 5.408 |
| SRR1783602 | moderate drought stress | 15.821 |
| SRR1811619 | moderate drought stress | 15.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.876 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.102 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.705 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.398 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.320 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.828 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.390 |
| SRR2967015 | Control (Tissue:root) | 7.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.388 |
| SRR9715740 | Leave | 6.169 |
| SRR9715741 | Leave | 6.131 |
| SRR9715739 | Root | 3.840 |
| SRR9715742 | Root | 2.833 |
| SRR9715743 | Root | 2.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.955 |
| SRR8749028 | MeJA induced 9h | 14.581 |
| SRR8749029 | MeJA induced 9h | 6.355 |
| SRR8749030 | Uninduced | 11.157 |
| SRR8749031 | Uninduced | 2.029 |
| SRR8749032 | Uninduced | 5.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.664 |
| SRR8400027 | Control-Root | 6.290 |