Gene detail information of Glyur000139s00009299.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50870.11.00E-87ubiquitin-conjugating enzyme 27
NRXP_004501731.11.00E-133PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform X1 [Cicer arietinum]
COGYP_008797956.12.00E-21ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9FI61|UBC27_ARATH2.00E-110Ubiquitin-conjugating enzyme E2 27
trEMBLtr|I3SXJ9|I3SXJ9_LOTJA2.00E-130Uncharacterized protein {ECO:0000313|EMBL:AFK44991.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00139274187277464-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04649HIP2, UBC1 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000139s00009299.1PF00179.21UQ_con471851.20E-42
Glyur000139s00009299.1PF00627.26UBA1982323.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control110.044
SRR1783600control111.011
SRR1783602moderate drought stress180.778
SRR1811619moderate drought stress180.212

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain96.450
DRR006520Root Summer glycyrrhizin high producing strain95.535
DRR006521Root Winter glycyrrhizin high producing strain47.599
DRR006522Root Winter glycyrrhizin high producing strain47.117
DRR006523Root Summer glycyrrhizin low producing strain112.854
DRR006524Root Summer glycyrrhizin low producing strain112.756
DRR006525Leaf Summer glycyrrhizin high producing strain66.359
DRR006526Leaf Summer glycyrrhizin high producing strain65.793

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)94.021
SRR2868004Drought Stress(Tissue:root)90.307
SRR2967015Control (Tissue:root)91.245

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave57.740
SRR9715740Leave79.957
SRR9715741Leave53.830
SRR9715739Root35.638
SRR9715742Root37.815
SRR9715743Root37.433

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h202.092
SRR8749028MeJA induced 9h136.318
SRR8749029MeJA induced 9h121.705
SRR8749030Uninduced33.178
SRR8749031Uninduced6.486
SRR8749032Uninduced26.701

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root88.589
SRR8400027Control-Root98.246

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved