Gene detail information of Glyur000140s00011439.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51080.14.00E-39GATA transcription factor 6
NRXP_004512096.17.58E-89PREDICTED: GATA transcription factor 5-like [Cicer arietinum]
Swissprottr|Q9FH57|GATA5_ARATH2.00E-52GATA transcription factor 5
trEMBLtr|V7CM05|V7CM05_PHAVU2.00E-82Uncharacterized protein {ECO:0000313|EMBL:ESW29946.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0014023893713+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000140s00011439.1PF00320.22GATA1972313.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.579
SRR1783600control10.457
SRR1783602moderate drought stress9.616
SRR1811619moderate drought stress9.211

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.502
DRR006520Root Summer glycyrrhizin high producing strain6.381
DRR006521Root Winter glycyrrhizin high producing strain0.392
DRR006522Root Winter glycyrrhizin high producing strain0.333
DRR006523Root Summer glycyrrhizin low producing strain7.163
DRR006524Root Summer glycyrrhizin low producing strain6.703
DRR006525Leaf Summer glycyrrhizin high producing strain9.071
DRR006526Leaf Summer glycyrrhizin high producing strain8.419

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.578
SRR2868004Drought Stress(Tissue:root)4.424
SRR2967015Control (Tissue:root)4.917

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.052
SRR9715740Leave14.215
SRR9715741Leave8.137
SRR9715739Root11.782
SRR9715742Root7.682
SRR9715743Root6.815

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.830
SRR8749028MeJA induced 9h7.106
SRR8749029MeJA induced 9h18.065
SRR8749030Uninduced1.088
SRR8749031Uninduced1.221
SRR8749032Uninduced8.094

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.641
SRR8400027Control-Root6.941

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved