Gene detail information of Glyur000140s00011445.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G16485.10nucleic acid binding;zinc ion binding;DNA binding
NRXP_006573570.10PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max]
Swissprottr|Q9SIV5|C3H19_ARATH0Zinc finger CCCH domain-containing protein 19
trEMBLtr|K7K4A2|K7K4A2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37393.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001403805057407-


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006352  DNA-templated transcription, initiation

GO:0016570  histone modification


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000140s00011445.1PF02201.13SWIB3093791.30E-18
Glyur000140s00011445.1PF03126.13Plus-34455239.90E-15
Glyur000140s00011445.1PF02213.11GYF7277803.20E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.241
SRR1783600control20.087
SRR1783602moderate drought stress20.598
SRR1811619moderate drought stress19.830

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.560
DRR006520Root Summer glycyrrhizin high producing strain62.064
DRR006521Root Winter glycyrrhizin high producing strain62.011
DRR006522Root Winter glycyrrhizin high producing strain61.874
DRR006523Root Summer glycyrrhizin low producing strain122.341
DRR006524Root Summer glycyrrhizin low producing strain117.888
DRR006525Leaf Summer glycyrrhizin high producing strain23.518
DRR006526Leaf Summer glycyrrhizin high producing strain25.885

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.457
SRR2868004Drought Stress(Tissue:root)58.005
SRR2967015Control (Tissue:root)55.868

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave102.898
SRR9715740Leave67.544
SRR9715741Leave107.827
SRR9715739Root29.388
SRR9715742Root129.095
SRR9715743Root111.584

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.406
SRR8749028MeJA induced 9h100.728
SRR8749029MeJA induced 9h82.706
SRR8749030Uninduced123.388
SRR8749031Uninduced67.489
SRR8749032Uninduced37.490

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.657
SRR8400027Control-Root57.254

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved