Gene detail information of Glyur000140s00011449.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38960.1 | 1.00E-47 | B-box type zinc finger family protein |
| NR | KHN36052.1 | 1.38E-94 | Putative salt tolerance-like protein [Glycine soja] |
| Swissprot | tr|C0SVM5|BBX19_ARATH | 5.00E-59 | B-box zinc finger protein 19 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1J8N5|I1J8N5_SOYBN | 6.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00140 | 83403 | 87245 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBB |
| EAR motif-containing Proteins | DBB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000140s00011449.2 | PF00643.19 | zf-B_box | 4 | 33 | 4.70E-05 |
| Glyur000140s00011449.2 | PF00643.19 | zf-B_box | 52 | 84 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.292 |
| SRR1783600 | control | 19.009 |
| SRR1783602 | moderate drought stress | 20.417 |
| SRR1811619 | moderate drought stress | 20.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.219 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.920 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.168 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.515 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 56.098 |
| SRR2868004 | Drought Stress(Tissue:root) | 123.510 |
| SRR2967015 | Control (Tissue:root) | 57.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 70.372 |
| SRR9715740 | Leave | 120.425 |
| SRR9715741 | Leave | 61.152 |
| SRR9715739 | Root | 32.532 |
| SRR9715742 | Root | 30.980 |
| SRR9715743 | Root | 26.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.156 |
| SRR8749028 | MeJA induced 9h | 48.105 |
| SRR8749029 | MeJA induced 9h | 42.708 |
| SRR8749030 | Uninduced | 51.713 |
| SRR8749031 | Uninduced | 37.945 |
| SRR8749032 | Uninduced | 53.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 119.429 |
| SRR8400027 | Control-Root | 89.045 |