Gene detail information of Glyur000140s00011471.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66280.10GDP-D-mannose 4,6-dehydratase 1
NRXP_007157933.10hypothetical protein PHAVU_002G110300g [Phaseolus vulgaris]
COGYP_003824909.10GDP-mannose 4,6-dehydratase [Thermosediminibacter oceani DSM 16646]
Swissprottr|Q9SNY3|GMD1_ARATH0GDP-mannose 4,6 dehydratase 1
trEMBLtr|V7CIA4|V7CIA4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW29927.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00140164136166507-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01711gmd, GMDS EC:4.2.1.47 Fructose and mannose metabolism map00051
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0019673  GDP-mannose metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0008446  GDP-mannose 4,6-dehydratase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000140s00011471.1PF01370.16Epimerase212712.10E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control52.205
SRR1783600control52.750
SRR1783602moderate drought stress27.943
SRR1811619moderate drought stress29.846

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.396
DRR006520Root Summer glycyrrhizin high producing strain29.943
DRR006521Root Winter glycyrrhizin high producing strain13.380
DRR006522Root Winter glycyrrhizin high producing strain13.116
DRR006523Root Summer glycyrrhizin low producing strain60.508
DRR006524Root Summer glycyrrhizin low producing strain60.191
DRR006525Leaf Summer glycyrrhizin high producing strain10.967
DRR006526Leaf Summer glycyrrhizin high producing strain10.843

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.326
SRR2868004Drought Stress(Tissue:root)27.682
SRR2967015Control (Tissue:root)29.866

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.975
SRR9715740Leave11.016
SRR9715741Leave19.340
SRR9715739Root50.248
SRR9715742Root46.932
SRR9715743Root47.286

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.614
SRR8749028MeJA induced 9h59.338
SRR8749029MeJA induced 9h59.669
SRR8749030Uninduced42.613
SRR8749031Uninduced20.019
SRR8749032Uninduced26.753

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.167
SRR8400027Control-Root32.758

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved