Gene detail information of Glyur000140s00011472.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19860.1 | 1.00E-27 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_006574681.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1 [Glycine max] |
| Swissprot | tr|Q94C33|C3H45_ARATH | 4.00E-53 | Zinc finger CCCH domain-containing protein 45 |
| trEMBL | tr|K7K6H9|K7K6H9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G05580.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00140 | 177681 | 183514 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.573 |
| SRR1783600 | control | 5.716 |
| SRR1783602 | moderate drought stress | 3.863 |
| SRR1811619 | moderate drought stress | 3.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.521 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.846 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.640 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.544 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.580 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.326 |
| SRR2967015 | Control (Tissue:root) | 2.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.116 |
| SRR9715740 | Leave | 0.335 |
| SRR9715741 | Leave | 0.513 |
| SRR9715739 | Root | 0.809 |
| SRR9715742 | Root | 4.359 |
| SRR9715743 | Root | 4.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.638 |
| SRR8749028 | MeJA induced 9h | 83.110 |
| SRR8749029 | MeJA induced 9h | 89.180 |
| SRR8749030 | Uninduced | 88.186 |
| SRR8749031 | Uninduced | 109.665 |
| SRR8749032 | Uninduced | 73.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.645 |
| SRR8400027 | Control-Root | 2.113 |