Gene detail

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Gene detail information of Glyur000140s00011488.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51240.1	1.00E-119	flavanone 3-hydroxylase
NR	ABM64799.1	7.55E-160	flavanone-3-hydroxylase [Gossypium hirsutum]
COG	YP_553500.1	2.00E-23	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|P41090\|FL3H_VITVI	3.00E-157	Naringenin,2-oxoglutarate 3-dioxygenase
trEMBL	tr\|A2IBF9\|A2IBF9_GOSHI	3.00E-160	Flavanone-3-hydroxylase {ECO:0000313\|EMBL:ABM64799.1}

Sequence

Transcript Sequence

>Glyur000140s00011488.1
ATGTTATGTTATTTGTTGAGGATACGGTTTGCATGCATATTGCAGGGAGAAGCGGTGCAGGATTGGAGAGAGATTGTGACATACTTTTCATACCCAATTAGGAACAGGGATTATTCAAGGTGGCCAGATAAGCCAGAAGGGTGGAAGAAAGTGACGGAGGAATACAGCGAGAAGCTTATGGGTTTGGCGTGTAAGCTGTTGGAGGTGTTGTCGGAGGCAATGGGGTTAGAGAAGGAAGCACTCACAAAGGCATGTGTGGATATGGATCAAAAGGTTGTGGTGAATTTCTACCCAAAATGCCCACAACCTGACCTCACACTTGGACTCAAACGCCACACTGACCCAGGTACCATTACCTTGCTGCTTCAGGACCAAGTGGGTGGACTTCAGGCTACAAAGGATAATGGCAAAACATGGATCACTGTTCAGCCTGTGGAGGGAGCTTTTGTTGTCAACCTTGGAGACCATGGTCATTATCTGAGTAATGGGAGGTTCAAGAATGCTGATCACCAAGCAGTGGTGAACTCGAACCNTAGCCGTTTATCCATAGCGACATTCCAAAACCCAGCACCAGAGGCAACGGTGTATCCGCTGAAGGTGAGAGAGGGAGAGAAGCCTGTGCTGGAGGAACCAATCCCATTCACAGAGATGTACAGGAGGAAGATGAGTAAGGACCTTGAGACTGCTAGGCTTAAGAAGCTTGCTAAGGAGAAGCAATTAATGCAGGAACAACAGGAGAAAGTACTCAAACTGCAGGAGACCACCAAGCNTATGGATGAGATTCTTGCCTAGATGACATCGATTCCATTGTTAATGTGTGTTTGAATATTTTTGCATGCTCAAACGGATCTTTGTCACTTTTGCCCCTTGTCTACCTCGCTACTTGTTGGGTTGTGTCAATTAAGCTTATAGTCGTGTATGAAAAATGTGTCGTTCATTTGTCCATGTTGTTAGGACCAAATGGGGATATATGTCTCTGTGAAAGCTAGTCTCATATATGTTCCATATAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00140	296082	297814	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00475	E1.14.11.9	EC:1.14.11.9	Flavonoid biosynthesis	map00941

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0016491 oxidoreductase activity GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000140s00011488.1	PF03171.15	2OG-FeII_Oxy	90	189	1.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.108
SRR1783600	control	0.109
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.109
DRR006522	Root Winter glycyrrhizin high producing strain	0.107
DRR006523	Root Summer glycyrrhizin low producing strain	0.219
DRR006524	Root Summer glycyrrhizin low producing strain	0.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	202.391
DRR006526	Leaf Summer glycyrrhizin high producing strain	200.265

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.124
SRR2868004	Drought Stress(Tissue:root)	0.049
SRR2967015	Control (Tissue:root)	0.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	328.226
SRR9715740	Leave	32.707
SRR9715741	Leave	75.708
SRR9715739	Root	0.221
SRR9715742	Root	0.000
SRR9715743	Root	0.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.232
SRR8749028	MeJA induced 9h	0.163
SRR8749029	MeJA induced 9h	0.418
SRR8749030	Uninduced	1.349
SRR8749031	Uninduced	3.056
SRR8749032	Uninduced	0.868

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.124
SRR8400027	Control-Root	0.360