Gene detail information of Glyur000141s00009797.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17230.2 | 7.00E-137 | PHYTOENE SYNTHASE |
| NR | XP_003545292.1 | 0 | PREDICTED: phytoene synthase, chloroplastic [Glycine max] |
| COG | NP_682350.1 | 6.00E-103 | phytoene synthase [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|P49293|PSY_CUCME | 2.00E-174 | Phytoene synthase, chloroplastic (Precursor) |
| trEMBL | tr|I1M704|I1M704_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G03500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 10673 | 14151 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02291 | crtB | EC:2.5.1.32 2.5.1.99 | Carotenoid biosynthesis | map00906 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009797.1 | PF00494.14 | SQS_PSY | 102 | 345 | 3.40E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.359 |
| SRR1783600 | control | 0.333 |
| SRR1783602 | moderate drought stress | 0.410 |
| SRR1811619 | moderate drought stress | 0.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.154 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.730 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.469 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.553 |
| SRR2967015 | Control (Tissue:root) | 2.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 81.440 |
| SRR9715740 | Leave | 109.235 |
| SRR9715741 | Leave | 72.445 |
| SRR9715739 | Root | 0.070 |
| SRR9715742 | Root | 1.303 |
| SRR9715743 | Root | 0.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.296 |
| SRR8749028 | MeJA induced 9h | 10.119 |
| SRR8749029 | MeJA induced 9h | 19.535 |
| SRR8749030 | Uninduced | 12.226 |
| SRR8749031 | Uninduced | 8.196 |
| SRR8749032 | Uninduced | 16.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.505 |
| SRR8400027 | Control-Root | 1.513 |