Gene detail information of Glyur000141s00009807.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G30800.10helicase in vascular tissue and tapetum
NRXP_003518495.10PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max]
COGYP_005368855.11.00E-38ATP-dependent helicase [Corallococcus coralloides DSM 2259]
Swissprottr|Q38953|DHX8_ARATH7.00E-46Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K7KB99|K7KB99_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45220.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001414936856892-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000141s00009807.1PF01424.17R3H611167.50E-12
Glyur000141s00009807.1PF00270.24DEAD2243866.60E-08
Glyur000141s00009807.1PF00271.26Helicase_C6197062.20E-11
Glyur000141s00009807.1PF04408.18HA27708639.00E-15
Glyur000141s00009807.1PF07717.11OB_NTP_bind90210181.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.107
SRR1783600control7.125
SRR1783602moderate drought stress9.167
SRR1811619moderate drought stress9.033

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.642
DRR006520Root Summer glycyrrhizin high producing strain8.820
DRR006521Root Winter glycyrrhizin high producing strain15.219
DRR006522Root Winter glycyrrhizin high producing strain14.696
DRR006523Root Summer glycyrrhizin low producing strain8.847
DRR006524Root Summer glycyrrhizin low producing strain8.791
DRR006525Leaf Summer glycyrrhizin high producing strain5.954
DRR006526Leaf Summer glycyrrhizin high producing strain5.823

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.900
SRR2868004Drought Stress(Tissue:root)10.141
SRR2967015Control (Tissue:root)13.014

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.527
SRR9715740Leave8.621
SRR9715741Leave9.834
SRR9715739Root1.915
SRR9715742Root12.348
SRR9715743Root11.008

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.847
SRR8749028MeJA induced 9h9.047
SRR8749029MeJA induced 9h7.532
SRR8749030Uninduced4.435
SRR8749031Uninduced3.614
SRR8749032Uninduced5.146

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.505
SRR8400027Control-Root14.476

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved