Gene detail information of Glyur000141s00009808.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08560.20transducin family protein / WD-40 repeat family protein
NRXP_004491280.10PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum]
COGYP_007057045.17.00E-36WD40 repeat-containing protein [Rivularia sp. PCC 7116]
Swissprottr|A8IZG4|CIAO1_CHLRE4.00E-22Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255|HAMAP-Rule:MF_03037}
trEMBLtr|G7KD13|G7KD13_MEDTR0Transducin/WD40 repeat protein {ECO:0000313|EMBL:AET00288.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001415767262110-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000141s00009808.1PF00400.27WD402582932.20E-08
Glyur000141s00009808.1PF00400.27WD403013371.00E-06
Glyur000141s00009808.1PF00400.27WD403423790.0068
Glyur000141s00009808.1PF00400.27WD404335060.11
Glyur000141s00009808.1PF00400.27WD405125491.70E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.309
SRR1783600control22.449
SRR1783602moderate drought stress15.898
SRR1811619moderate drought stress15.727

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.478
DRR006520Root Summer glycyrrhizin high producing strain25.552
DRR006521Root Winter glycyrrhizin high producing strain34.328
DRR006522Root Winter glycyrrhizin high producing strain33.305
DRR006523Root Summer glycyrrhizin low producing strain29.657
DRR006524Root Summer glycyrrhizin low producing strain29.468
DRR006525Leaf Summer glycyrrhizin high producing strain8.338
DRR006526Leaf Summer glycyrrhizin high producing strain8.502

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.497
SRR2868004Drought Stress(Tissue:root)54.411
SRR2967015Control (Tissue:root)52.773

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.775
SRR9715740Leave11.589
SRR9715741Leave14.063
SRR9715739Root3.075
SRR9715742Root16.619
SRR9715743Root16.037

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.467
SRR8749028MeJA induced 9h36.738
SRR8749029MeJA induced 9h39.038
SRR8749030Uninduced30.323
SRR8749031Uninduced34.132
SRR8749032Uninduced43.922

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.141
SRR8400027Control-Root51.446

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved