Gene detail information of Glyur000141s00009820.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30330.1 | 4.00E-83 | auxin response factor 6 |
| NR | KHN12007.1 | 0 | Auxin response factor 6 [Glycine soja] |
| Swissprot | tr|Q653U3|ARFQ_ORYSJ | 1.00E-111 | Auxin response factor 17 |
| trEMBL | tr|I1M725|I1M725_SOYBN | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 127325 | 134646 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009820.1 | PF02309.11 | AUX_IAA | 384 | 482 | 9.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.318 |
| SRR1783600 | control | 48.217 |
| SRR1783602 | moderate drought stress | 54.008 |
| SRR1811619 | moderate drought stress | 53.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.405 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.027 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.692 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.868 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.007 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.783 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.211 |
| SRR2967015 | Control (Tissue:root) | 55.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.672 |
| SRR9715740 | Leave | 15.833 |
| SRR9715741 | Leave | 20.006 |
| SRR9715739 | Root | 30.511 |
| SRR9715742 | Root | 37.087 |
| SRR9715743 | Root | 32.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.167 |
| SRR8749028 | MeJA induced 9h | 57.459 |
| SRR8749029 | MeJA induced 9h | 48.657 |
| SRR8749030 | Uninduced | 18.822 |
| SRR8749031 | Uninduced | 10.868 |
| SRR8749032 | Uninduced | 17.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 60.510 |
| SRR8400027 | Control-Root | 59.177 |