Gene detail information of Glyur000141s00009825.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23820.1 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_003617307.1 | 0 | Glycoside hydrolase family 28 protein [Medicago truncatula] |
| COG | YP_001179193.1 | 2.00E-58 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 9.00E-137 | Probable polygalacturonase |
| trEMBL | tr|G7KCZ1|G7KCZ1_MEDTR | 0 | Polygalacturonase/glycoside hydrolase family protein {ECO:0000313|EMBL:AET00266.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 146566 | 150483 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009825.1 | PF00295.12 | Glyco_hydro_28 | 145 | 412 | 5.80E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.091 |
| SRR1783600 | control | 10.083 |
| SRR1783602 | moderate drought stress | 9.328 |
| SRR1811619 | moderate drought stress | 9.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.322 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.108 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.063 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.014 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.082 |
| SRR2967015 | Control (Tissue:root) | 20.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.762 |
| SRR9715740 | Leave | 15.657 |
| SRR9715741 | Leave | 13.387 |
| SRR9715739 | Root | 12.389 |
| SRR9715742 | Root | 11.847 |
| SRR9715743 | Root | 11.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.451 |
| SRR8749028 | MeJA induced 9h | 7.753 |
| SRR8749029 | MeJA induced 9h | 6.750 |
| SRR8749030 | Uninduced | 4.483 |
| SRR8749031 | Uninduced | 2.607 |
| SRR8749032 | Uninduced | 2.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.565 |
| SRR8400027 | Control-Root | 23.758 |