Gene detail

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Gene detail information of Glyur000141s00009829.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20270.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003545159.1	0	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3-like [Glycine max]
COG	YP_004775215.1	1.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O65440\|BAME3_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor)
trEMBL	tr\|I1M732\|I1M732_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G03770.1}

Sequence

Transcript Sequence

>Glyur000141s00009829.1
ATGGATACTCCTACAACTTTCAGTTTTGTACTATATTATAGCCTCCTCCTTTTGTGCCTCAATAGTGCTGCTTCTTCTGTTTCTTCACTTCCTATTATGTCTCTGAGAAGGCAAGCTTCTATCTTGGTTGCTCTCAAACAAGACTTTGAAGCAGCCAACAACACTTCTTCCTCCTTGAACAGCTGGGACATGTCTAACTACATGTCCCTTTGCACTAATTGGGTTGGCATTCAGTGTGACAAAAAGAACAGGTCTGTGGTGTCACTAGACATATCCAACTTGAACCTTTCTGGGACACTCTNGCCTGCCATCACAGGACTCAGGAGCCTTGTGAGTGTCTCGGTCGCGGGGAACGGCTTTTCCGGNGAATTCCCGGCCGGTATTCACAGGCTAGCAGGGCTGAGGTACCTCAACATATCCAACAACATGTTCAGTGGGAACATGAGTAGCTGGGGATTCTCTCACTTGAAGGAGCTCCAAGTGCTGGATGCTTATAACAATGAGTTCAATTGCTCACTCCCTCTTGGTGTCACTGAGCTACCTAAGCTCAAGTACTTGAATTTTGGAGGGAACTATTTCTCTGGTGAAATCCCTCCACGCTATGGAAACATGTTGCAGCTTAACTACTTGTCTCTTGCAGGAAATGATCTTGGAGGTTTCATACCTTCTGAGCTTGGGANTCTCACTAACCTGACACAGCTTTTCTTGGGATATTACAACCAATTTGAGGGTGGAATTCCACCTCAATTTGGTAAGCTGGTCAATTTAGCTCACNTTGACCTTGCAAACTGTGGTTTGAAGGGTCCAATTCCAGCTGAGTTGGGAAACCTCTACAAGCTAGACACACTCTTCTTGCAAACTAACCAGCTCAGTGGTTCAATCCCTCCCCAACTAGGCAACTTGAGTAGCTTAAAGTCTCTTGATCTATCAAACAATGAGTTAATAGGTGACATCCCAAATGAGTTCTCAGGCCTTCATGAGCTTACCCTCTTGAACCTATTCATCAACAGGTTGCATGGTGAGATTCCACCTTTCATTGCTGAGCTACCAAACCTGGAAGTGTTGAAGCTTTGGCATAACAACTTCACAGGAGCCATCNCTTCAAGGCTTGGCCAGAATGGTAAATTGACCGAGCTTGACCTGTCAACAAACAAGCTCACTGGATTGGTGCCAAAATCTTTGTGCCTTGGAAAGAGGCTCAAGATTTTGATCTTGCTCAACAATTTTCTGTTTGGATCCTTGCCTTCTGATCTTGGCCAATGCTACACACTCCAAAGAGTTCGTCTGGGACAGAACTATTTGACAGGATCAATACCAAAGGGGTTTCTTTATTTGCCTGAGCTTTCCCTTTTGGAACTACAGAACAATTATCTTAGTGGTTGGCTTCCACAAGAAACAAGCACTGCTGCACCCTCTAAACTTGGACAGCTGAATCTATCAAACAATCGCCTATCNGGGTCGCTTCCAGCCTCTATCGGAAGCTTTCCCAGCTTGCAAATTCTGCTGCTTCATGGGAATAGATTCTCAGGAGAAATCCCTCCAGATATAGGGAGGTTGAAAAATGTTCTCAAGTTGGATATGAGTGTCAACAACTTCTCAGGCAGTATTCCACCTGAGATAGGTAACTGTGTTTTGCTCACCTATTTAGATTTGAGCCAGAACCAACTATCAGGCCCTATCCCAGTTCAGGTTTCTCAAATTCACATACTTAACTATCTTAATGTCTCATGGAACCACCTAAACCNAAGTCTTCCCAAGGAACTNGGGGCAATTAAGGGCTTAACTTCAGTAGATTTCTCTCATAATAACTTCTCTGGTTCAATTCCTGGGGTGGGACAATTCTCAGTCTTCAATTCTACATCCTTTGTGGGAAATCCTCAGCTATGTGGATATGATTTGAATCCATGCAACCACTCTTCAACAGCAATAGTGGAGTCTCAGGATAATGGCAGTGCAAAACCTGGANTTCTTGGCAAGTATAAGCTTCTCTTTGCATTGGCACTGTTGGTTTGTTCATTGGTGTTTGCAACCTTAGCCATTATCAAGAGCAGAAAGGGAAGGAGGAGGCACTCCAATTCATGGAAGCTCACAACTTTTCAGAAGCTGGAATATGGAAGTGAAGACATCTTGGGGTGTGTAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGGTTGTATATGGAGGAACCATGCCAAATGGGGAGCAAGTAGCTACCAATTTGCTTGTCTATGAGTACATGCCAAATGGTAGCTTGGGTGAAGTGTTGCATGGGAAAAGGGGTGAGTTTCTCAAGTGGGATACTAGGCTGAAGATAGCAACAGAAGCTGCTAAAGGGCTTTGTTATTTGCACCATGATTGTTCCCCTCTGATAATCCATAGAGATGTCAAGTCAAACAACATATTGTTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGTACATCAGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTACATAGCTCCAGAATATGCATATACATTGAAAGTTGACGAGAAGAGCGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTATTAACGGGGCGAAGGCCGGTGGGGGGTTTTGGGGAAGAAGGGATAATAGATATTGTTCAATGGACCAAGTTACAAACAGATTGGAACAAAGAAAGGGTGGTGAAGATCCTTGATGGGAGGCTACGTCACAATAACATTCCCTTAGATGAAGCTATGCAGGTATTCTTCGTGGCAATGTTGTGTGTTCAGGAACAAAGCGTGGAGAGACCAAACCATGAGGGAAGTAGTTGAAATGCTTGCACAAGCAAAGCAACCAAATGCATTTCAAATGCAGTGACTAGTGATCACACAAGGAAAGTATTAAAAAAAACATACAAATAAAAGAAAAAGCTGAGTGCCTCCTTTGCATGTGTTGTTCAATTTCCCTAACTAGTTTGTTTTGAAGATTTTGTTTTGCTTACCTCTTTATTACAGAGTAGCATATATG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	188172	192607	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009829.1	PF00560.28	LRR_1	134	156	0.4
Glyur000141s00009829.1	PF00560.28	LRR_1	303	325	0.011
Glyur000141s00009829.1	PF13504.1	LRR_7	374	389	2.6
Glyur000141s00009829.1	PF00560.28	LRR_1	476	494	0.66
Glyur000141s00009829.1	PF00560.28	LRR_1	497	519	0.86
Glyur000141s00009829.1	PF00560.28	LRR_1	546	562	0.98
Glyur000141s00009829.1	PF00069.20	Pkinase	741	901	1.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.914
SRR1783600	control	1.947
SRR1783602	moderate drought stress	3.308
SRR1811619	moderate drought stress	3.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.895
DRR006520	Root Summer glycyrrhizin high producing strain	4.917
DRR006521	Root Winter glycyrrhizin high producing strain	0.536
DRR006522	Root Winter glycyrrhizin high producing strain	0.556
DRR006523	Root Summer glycyrrhizin low producing strain	4.020
DRR006524	Root Summer glycyrrhizin low producing strain	3.872
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.118
SRR2868004	Drought Stress(Tissue:root)	16.377
SRR2967015	Control (Tissue:root)	34.076

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.466
SRR9715740	Leave	1.134
SRR9715741	Leave	1.439
SRR9715739	Root	0.503
SRR9715742	Root	5.372
SRR9715743	Root	4.823

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.001
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.346
SRR8400027	Control-Root	6.180