Gene detail information of Glyur000141s00009830.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G13370.10chromatin remodeling 5
NRXP_006575632.10PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine max]
COGYP_004462436.12.00E-64SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprottr|F4IV99|CHR5_ARATH0Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115}
trEMBLtr|I1JIZ0|I1JIZ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45000.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00141195487212615+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000141s00009830.1PF00385.19Chromo4614925.20E-05
Glyur000141s00009830.1PF00385.19Chromo5345882.50E-15
Glyur000141s00009830.1PF00176.18SNF2_N6288959.10E-53
Glyur000141s00009830.1PF00271.26Helicase_C95710368.50E-16
Glyur000141s00009830.1PF13907.1DUF4208150916082.20E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.752
SRR1783600control8.641
SRR1783602moderate drought stress9.678
SRR1811619moderate drought stress9.657

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.047
DRR006520Root Summer glycyrrhizin high producing strain11.691
DRR006521Root Winter glycyrrhizin high producing strain11.474
DRR006522Root Winter glycyrrhizin high producing strain10.984
DRR006523Root Summer glycyrrhizin low producing strain12.336
DRR006524Root Summer glycyrrhizin low producing strain12.358
DRR006525Leaf Summer glycyrrhizin high producing strain7.391
DRR006526Leaf Summer glycyrrhizin high producing strain7.327

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.990
SRR2868004Drought Stress(Tissue:root)22.841
SRR2967015Control (Tissue:root)23.636

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.238
SRR9715740Leave11.035
SRR9715741Leave15.549
SRR9715739Root1.242
SRR9715742Root9.154
SRR9715743Root7.737

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.899
SRR8749028MeJA induced 9h14.781
SRR8749029MeJA induced 9h6.416
SRR8749030Uninduced11.042
SRR8749031Uninduced17.710
SRR8749032Uninduced10.970

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.591
SRR8400027Control-Root18.175

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved