Gene detail information of Glyur000141s00009831.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G13360.20alanine:glyoxylate aminotransferase
NRXP_004499480.10PREDICTED: serine--glyoxylate aminotransferase-like [Cicer arietinum]
COGYP_002362023.15.00E-141class V aminotransferase [Methylocella silvestris BL2]
Swissprottr|Q56YA5|SGAT_ARATH0Serine--glyoxylate aminotransferase
trEMBLtr|G7J013|G7J013_MEDTR0Serine-glyoxylate aminotransferase-like protein {ECO:0000313|EMBL:AES70410.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00141214826218296+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00830AGXT EC:2.6.1.44 2.6.1.45 2.6.1.51 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Peroxisomemap04146


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000141s00009831.1PF00266.14Aminotran_5122222.90E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.050
SRR1783602moderate drought stress0.127
SRR1811619moderate drought stress0.132

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.102
DRR006520Root Summer glycyrrhizin high producing strain0.085
DRR006521Root Winter glycyrrhizin high producing strain0.089
DRR006522Root Winter glycyrrhizin high producing strain0.086
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain80.522
DRR006526Leaf Summer glycyrrhizin high producing strain82.279

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.892
SRR2868004Drought Stress(Tissue:root)21.293
SRR2967015Control (Tissue:root)30.034

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave111.108
SRR9715740Leave164.331
SRR9715741Leave99.225
SRR9715739Root0.040
SRR9715742Root0.174
SRR9715743Root0.042

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.943
SRR8749028MeJA induced 9h13.707
SRR8749029MeJA induced 9h9.924
SRR8749030Uninduced14.206
SRR8749031Uninduced74.325
SRR8749032Uninduced56.877

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.655
SRR8400027Control-Root4.422

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved