Gene detail information of Glyur000142s00009085.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.15.00E-100chitinase A
NRXP_002279205.11.56E-171PREDICTED: acidic endochitinase-like [Vitis vinifera]
COGYP_005529523.12.00E-11chitinase [Amycolatopsis mediterranei S699]
Swissprottr|P29060|CHIA_TOBAC4.00E-137Acidic endochitinase (Precursor)
trEMBLtr|F6I675|F6I675_VITVI1.00E-172Putative uncharacterized protein {ECO:0000313|EMBL:CCB62471.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001421492815836-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000142s00009085.1PF00704.23Glyco_hydro_18312534.90E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.594
SRR1783600control2.601
SRR1783602moderate drought stress4.083
SRR1811619moderate drought stress4.291

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.949
DRR006520Root Summer glycyrrhizin high producing strain3.448
DRR006521Root Winter glycyrrhizin high producing strain2.147
DRR006522Root Winter glycyrrhizin high producing strain2.005
DRR006523Root Summer glycyrrhizin low producing strain3.833
DRR006524Root Summer glycyrrhizin low producing strain3.838
DRR006525Leaf Summer glycyrrhizin high producing strain5.129
DRR006526Leaf Summer glycyrrhizin high producing strain5.647

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.236
SRR2868004Drought Stress(Tissue:root)6.003
SRR2967015Control (Tissue:root)7.154

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.313
SRR9715740Leave7.023
SRR9715741Leave5.493
SRR9715739Root1.531
SRR9715742Root2.674
SRR9715743Root1.963

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.874
SRR8749028MeJA induced 9h4.390
SRR8749029MeJA induced 9h3.112
SRR8749030Uninduced2.377
SRR8749031Uninduced2.700
SRR8749032Uninduced2.261

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.281
SRR8400027Control-Root6.140

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved