Gene detail

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Gene detail information of Glyur000142s00009095.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02810.1	2.00E-131	Protein kinase superfamily protein
NR	XP_003626509.1	0	Protein kinase-like protein [Medicago truncatula]
COG	YP_002017974.1	3.00E-24	serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|Q9SFT7\|Y3707_ARATH	1.00E-164	Serine/threonine-protein kinase At3g07070
trEMBL	tr\|G7L303\|G7L303_MEDTR	0	Receptor kinase-like protein {ECO:0000313\|EMBL:AES82727.1}

Sequence

Transcript Sequence

>Glyur000142s00009095.1
ATGAATTGCTTTCCGTGTTTTACCTCTCAAAAGAGTAAAAAAAGCAATAGCAAGAGGGAGCATGCGGTTGCACCACCACCACCACAGGAAAACGTTATAACGAGAACACCCGATATAAAGAAACCAAAGCCAGAGGAAAACCAAGTTGACACTTCAAATATTCAAGCACAAAATTTCACTTTCCGTGAGCTGGCAATTGCAACAAAGAATTTCCGGCAAGAGTGCTTGATGGGTGAAGGTGGCTTCGGCAGAGTTTACAAGGGAACAATTCCTGCAACCGGGCAGGTGATAGCGGTGAAGCAACTTGACCGAAACGGGGTGCAAGGCAGCAAAGAATTTCTGGTTGAGGTTTTGATGTTAAGTCTCTTGAACCATGAAAATCTGGTCAAACTCATTGGTTATTGTGCAGATGGGGATCAACGTCTTCTGGTCTATGAATTCATGCCAGGGGGCTCTCTAGAAGGCCGTCTTCTTGACCGGAAACCTGATGAGCCTCCATTGGATTGGTATAGCAGAATGAAAATAGCATCTAATGCTGCGAAAGGGCTGTGGTACTTGCATGACAAGGCAAATCCCTCAGTTATATACCGGGACTTGAAATCGTCCAACATCTTGCTTGATAATGATCAGAATGCAAAACTATCTGATTATGGACTCGCCAAACTTGCTGGTAAAGATAAGATGAACATCGTGCCTACAAGAGTTATGGGTACCTATGGTTACAGTGCTCCAGAGTATGTGAGAACAGGTAACCTCACCTTGAAATCAGATGTGTTCAGTTTTGGGGTTGTTTTNCTGGAGCTCATAACCGGAAGACGAGCCATTGACACCACGAGACCNCACGACGAGCAAAATCTAGTTTCATGGGCACAACCAATATTTAGAGACCCAAAAAGATATGGAGATATGGCAGATCCAAATCTCAATAAGAATTTCCCAGAAAAGGATCTCAATCAAGTTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCAGCTGCCCGTCCTTTGATGAGTGATGTTGTGACTGCTCTGAGTTTTCTTTCCACGTCTCCTCCTCCTCCAGAGGTTGCTCCTTCCCCTCTCCCGCAAGCCAATAACTCGGCCTCCCAGAAGAGTGCTGCTAGTGAGAGTGATCAGAGTGAGAGTGAGAGTGAGAGAGAGGGTGAATCAGAAAGTGAAGAAGAGGGTAATGAAACTGCTCATAATAATAACCAGGTTGCAGCAGCCAGTGCAAAACACCAAGACAGTGAAGATGTCTCAGAAGCCGAATATGACTACTATGAGAATGAAAACCAGCATGATTACAGTCCACAAGATGTTCAAGAAACAAAGGAGTTCTACTCCAAATCAAGCCGCAAAAGCAGCACCAAATCAAAGAAGGGAACCAGAAGCAGCTCTAGTTCAGATTCAGAAAATGGAAGTGCCACCTCTAAAGGCCACAAAAGCAGTAGGAAAAAGCATGGTGTCAAGGGAAGTTTAAGCCAGAAGAGCAGTAAGAAGAAATCTTCAGAAAGCCACAAGAAGAGCAAGGGTGCGGGATCGGATTATGGAAGCCATTCATCGCACCATTCCCGTCATAGCAGCAGTGGGGAGTCTGAGCGTGGTTACGGCAAGCCATCAAATGGAAATGAATATTCTTTTGGCCTAACCAGCATGGGGTCTGAGGAGGGAAGTTATCACCATTACGACCATTCCAGCAGCAGGGGATCAGATAAGGGAAGTGTTCATTCACAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	46664	49026	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009095.1	PF00069.20	Pkinase	76	341	5.30E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.148
SRR1783600	control	0.132
SRR1783602	moderate drought stress	0.284
SRR1811619	moderate drought stress	0.259

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.124
DRR006520	Root Summer glycyrrhizin high producing strain	0.184
DRR006521	Root Winter glycyrrhizin high producing strain	0.448
DRR006522	Root Winter glycyrrhizin high producing strain	0.588
DRR006523	Root Summer glycyrrhizin low producing strain	0.281
DRR006524	Root Summer glycyrrhizin low producing strain	0.347
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.043
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.282

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.397
SRR2868004	Drought Stress(Tissue:root)	0.404
SRR2967015	Control (Tissue:root)	0.434

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.396
SRR9715740	Leave	0.323
SRR9715741	Leave	0.116
SRR9715739	Root	0.000
SRR9715742	Root	0.011
SRR9715743	Root	0.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.753
SRR8749028	MeJA induced 9h	0.758
SRR8749029	MeJA induced 9h	0.820
SRR8749030	Uninduced	0.585
SRR8749031	Uninduced	0.285
SRR8749032	Uninduced	1.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.097
SRR8400027	Control-Root	0.198